Orthogroup:group_1907



Homologs in group_1907

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14220 FBDBKF_14220 Morganella morganii S1 yfcD NUDIX hydrolase YfcD
EHELCC_08060 EHELCC_08060 Morganella morganii S2 yfcD NUDIX hydrolase YfcD
NLDBIP_08385 NLDBIP_08385 Morganella morganii S4 yfcD NUDIX hydrolase YfcD
LHKJJB_05880 LHKJJB_05880 Morganella morganii S3 yfcD NUDIX hydrolase YfcD
HKOGLL_05035 HKOGLL_05035 Morganella morganii S5 yfcD NUDIX hydrolase YfcD
F4V73_RS02690 F4V73_RS02690 Morganella psychrotolerans yfcD NUDIX hydrolase YfcD
PMI_RS08725 PMI_RS08725 Proteus mirabilis HI4320 yfcD NUDIX hydrolase YfcD

Distribution of group_1907 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_1907 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1907

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_1907.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 yfcD 7

Product

# Product Occurence
1 NUDIX hydrolase YfcD 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1443 7 I Lipid transport and metabolism (I) Isopentenyldiphosphate isomerase

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00293 7 NUDIX domain

Annotations of the 42 SwissProt hits

Annotation Number of occurrences
Isopentenyl-diphosphate Delta-isomerase 18
Isopentenyl-diphosphate Delta-isomerase 2 2
Isopentenyl-diphosphate Delta-isomerase I 1
Isopentenyl-diphosphate Delta-isomerase I, chloroplastic 1
Isopentenyl-diphosphate Delta-isomerase II 1
Isopentenyl-diphosphate Delta-isomerase II, chloroplastic 1
Isopentenyl-diphosphate delta-isomerase 2 1
Nudix hydrolase 3 1
Nudix hydrolase DR_0079 1
Prenyl-diphosphate phosphatase 1
Uncharacterized Nudix hydrolase CA_C0446 1
Uncharacterized Nudix hydrolase PA4841 1
Uncharacterized Nudix hydrolase SCO1686 1
Uncharacterized Nudix hydrolase YPO2781/y1614/YP_2383 1
Uncharacterized Nudix hydrolase YfcD 6
Uncharacterized Nudix hydrolase all7351 1
Uncharacterized Nudix hydrolase lin0387 1
Uncharacterized Nudix hydrolase lmo0368 1
Uncharacterized Nudix hydrolase orf19 1

Protein length

Min length 180
Max length 210
Mean length (sd) 192.1 (8.9)
Median length 191.0

Protein length distribution