PF03313


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03313, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 22 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03313
Description Serine dehydratase alpha chain

Occurence in the database

PF03313 is associated with 22 different proteins (see tab "Protein list" and "Profile")
The 22 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_41 FBDBKF_01635 20513 21877 -1 sdaA L-serine ammonia-lyase Morganella morganii S1
1 group_41 FBDBKF_06960 55707 57074 -1 sdaA L-serine ammonia-lyase Morganella morganii S1
2 group_298 FBDBKF_07855 98400 99707 -1 cdsB L-cysteine desulfidase YhaM Morganella morganii S1
3 group_41 EHELCC_02105 408333 409697 -1 sdaA L-serine ammonia-lyase Morganella morganii S2
4 group_41 EHELCC_04010 129112 130479 1 sdaA L-serine ammonia-lyase Morganella morganii S2
5 group_298 EHELCC_13685 72594 73901 -1 cdsB L-cysteine desulfidase YhaM Morganella morganii S2
6 group_41 NLDBIP_01355 270439 271803 1 sdaA L-serine ammonia-lyase Morganella morganii S4
7 group_41 NLDBIP_04010 128908 130275 1 sdaA L-serine ammonia-lyase Morganella morganii S4
8 group_298 NLDBIP_14130 93469 94776 -1 cdsB L-cysteine desulfidase YhaM Morganella morganii S4
9 group_41 LHKJJB_00680 120882 122246 -1 sdaA L-serine ammonia-lyase Morganella morganii S3
10 group_298 LHKJJB_08720 64973 66280 1 cdsB L-cysteine desulfidase YhaM Morganella morganii S3
11 group_41 LHKJJB_09840 129022 130389 1 sdaA L-serine ammonia-lyase Morganella morganii S3
12 group_41 HKOGLL_00720 126393 127757 -1 sdaA L-serine ammonia-lyase Morganella morganii S5
13 group_298 HKOGLL_08270 64973 66280 1 cdsB L-cysteine desulfidase YhaM Morganella morganii S5
14 group_41 HKOGLL_09135 60663 62030 -1 sdaA L-serine ammonia-lyase Morganella morganii S5
15 group_41 F4V73_RS01155 242790 244154 -1 L-serine ammonia-lyase Morganella psychrotolerans
16 group_41 F4V73_RS03975 843552 844916 -1 L-serine ammonia-lyase Morganella psychrotolerans
17 group_298 F4V73_RS13175 254029 255336 1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha Morganella psychrotolerans
18 group_298 PMI_RS00700 179588 180910 -1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha Proteus mirabilis HI4320
19 group_41 PMI_RS03300 729577 730941 -1 L-serine ammonia-lyase Proteus mirabilis HI4320
20 group_41 PMI_RS07845 1717135 1718496 1 L-serine ammonia-lyase Proteus mirabilis HI4320
21 group_298 PMI_RS13525 2997776 2999125 -1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha Proteus mirabilis HI4320