PF03116


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03116, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03116
Description NQR2, RnfD, RnfE family

Occurence in the database

PF03116 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_928 FBDBKF_05040 14509 15603 1 rsxD electron transport complex subunit RsxD Morganella morganii S1
1 group_2015 FBDBKF_15135 38066 39304 1 nqrB NADH:ubiquinone reductase (Na(+)-transporting) subunit B Morganella morganii S1
2 group_2015 EHELCC_11110 45602 46840 -1 nqrB NADH:ubiquinone reductase (Na(+)-transporting) subunit B Morganella morganii S2
3 group_928 EHELCC_12550 165891 166985 -1 rsxD electron transport complex subunit RsxD Morganella morganii S2
4 group_2015 NLDBIP_11455 45602 46840 -1 nqrB NADH:ubiquinone reductase (Na(+)-transporting) subunit B Morganella morganii S4
5 group_928 NLDBIP_12890 165846 166940 -1 rsxD electron transport complex subunit RsxD Morganella morganii S4
6 group_2015 LHKJJB_11315 45602 46840 -1 nqrB NADH:ubiquinone reductase (Na(+)-transporting) subunit B Morganella morganii S3
7 group_928 LHKJJB_12750 165891 166985 -1 rsxD electron transport complex subunit RsxD Morganella morganii S3
8 group_2015 HKOGLL_09925 45602 46840 -1 nqrB NADH:ubiquinone reductase (Na(+)-transporting) subunit B Morganella morganii S5
9 group_928 HKOGLL_11365 165891 166985 -1 rsxD electron transport complex subunit RsxD Morganella morganii S5
10 group_928 F4V73_RS05480 1165924 1167018 1 rsxD electron transport complex subunit RsxD Morganella psychrotolerans
11 group_2015 F4V73_RS12310 45309 46547 -1 NADH:ubiquinone reductase (Na(+)-transporting) subunit B Morganella psychrotolerans
12 group_2015 PMI_RS01690 403168 404406 1 NADH:ubiquinone reductase (Na(+)-transporting) subunit B Proteus mirabilis HI4320
13 group_928 PMI_RS06305 1382721 1383797 1 rsxD electron transport complex subunit RsxD Proteus mirabilis HI4320