Orthogroup:group_995



Homologs in group_995

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05555 FBDBKF_05555 Morganella morganii S1 ttcA tRNA 2-thiocytidine(32) synthetase TtcA
EHELCC_12035 EHELCC_12035 Morganella morganii S2 ttcA tRNA 2-thiocytidine(32) synthetase TtcA
NLDBIP_12375 NLDBIP_12375 Morganella morganii S4 ttcA tRNA 2-thiocytidine(32) synthetase TtcA
LHKJJB_12235 LHKJJB_12235 Morganella morganii S3 ttcA tRNA 2-thiocytidine(32) synthetase TtcA
HKOGLL_10850 HKOGLL_10850 Morganella morganii S5 ttcA tRNA 2-thiocytidine(32) synthetase TtcA
F4V73_RS03745 F4V73_RS03745 Morganella psychrotolerans ttcA tRNA 2-thiocytidine(32) synthetase TtcA
PMI_RS06580 PMI_RS06580 Proteus mirabilis HI4320 ttcA tRNA 2-thiocytidine(32) synthetase TtcA

Distribution of group_995 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_995 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_995

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_995.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ttcA 7

Product

# Product Occurence
1 tRNA 2-thiocytidine(32) synthetase TtcA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0037 7 J Translation, ribosomal structure and biogenesis (J) tRNA(Ile)-lysidine synthase TilS/MesJ

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K14058 7 tRNA 2-thiocytidine biosynthesis protein TtcA - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01171 7 PP-loop family

Annotations of the 455 SwissProt hits

Annotation Number of occurrences
Bifunctional protein TilS/HprT 3
Cytoplasmic tRNA 2-thiolation protein 1 46
Probable sulfurtransferase 2
tRNA 2-thiolation protein NcsA 1
tRNA(Ile)-lysidine synthase 94
tRNA(Ile)-lysidine synthase, chloroplastic 2
tRNA-5-methyluridine(54) 2-sulfurtransferase 4
tRNA-cytidine(32) 2-sulfurtransferase 286
tRNA-cytidine(32) 2-sulfurtransferase 1 8
tRNA-cytidine(32) 2-sulfurtransferase 2 8
tRNA-specific 2-thiouridylase MnmA 1

Protein length

Min length 306
Max length 308
Mean length (sd) 307.4 (1.0)
Median length 308.0

Protein length distribution