Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02782, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 27 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF02782 |
---|---|
Description | FGGY family of carbohydrate kinases, C-terminal domain |
Occurence in the database
PF02782 is associated with 27 different proteins (see tab "Protein list" and "Profile") |
The 27 proteins are classified into 4 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_603 | FBDBKF_01840 | 54572 | 56206 | -1 | araB | Ribulose kinase | Morganella morganii S1 |
1 | group_2522 | FBDBKF_02200 | 129719 | 131314 | 1 | lsrK | autoinducer-2 kinase | Morganella morganii S1 |
2 | group_897 | FBDBKF_04695 | 140731 | 142242 | 1 | xylB | xylulokinase | Morganella morganii S1 |
3 | group_1764 | FBDBKF_12275 | 115138 | 116664 | 1 | glpK | glycerol kinase GlpK | Morganella morganii S1 |
4 | group_603 | EHELCC_02310 | 442392 | 444026 | -1 | araB | Ribulose kinase | Morganella morganii S2 |
5 | group_2522 | EHELCC_02670 | 517539 | 519134 | 1 | lsrK | autoinducer-2 kinase | Morganella morganii S2 |
6 | group_897 | EHELCC_05985 | 200188 | 201699 | 1 | xylB | xylulokinase | Morganella morganii S2 |
7 | group_1764 | EHELCC_14030 | 18041 | 19567 | -1 | glpK | glycerol kinase GlpK | Morganella morganii S2 |
8 | group_2522 | NLDBIP_00790 | 161002 | 162597 | -1 | lsrK | autoinducer-2 kinase | Morganella morganii S4 |
9 | group_603 | NLDBIP_01150 | 236110 | 237744 | 1 | araB | Ribulose kinase | Morganella morganii S4 |
10 | group_897 | NLDBIP_06305 | 241253 | 242764 | 1 | xylB | xylulokinase | Morganella morganii S4 |
11 | group_1764 | NLDBIP_15125 | 21978 | 23504 | -1 | glpK | glycerol kinase GlpK | Morganella morganii S4 |
12 | group_603 | LHKJJB_00885 | 154941 | 156575 | -1 | araB | Ribulose kinase | Morganella morganii S3 |
13 | group_2522 | LHKJJB_01245 | 230088 | 231683 | 1 | lsrK | autoinducer-2 kinase | Morganella morganii S3 |
14 | group_897 | LHKJJB_03185 | 218777 | 220288 | 1 | xylB | xylulokinase | Morganella morganii S3 |
15 | group_1764 | LHKJJB_15485 | 115138 | 116664 | 1 | glpK | glycerol kinase GlpK | Morganella morganii S3 |
16 | group_603 | HKOGLL_00925 | 160452 | 162086 | -1 | araB | Ribulose kinase | Morganella morganii S5 |
17 | group_2522 | HKOGLL_01285 | 235599 | 237194 | 1 | lsrK | autoinducer-2 kinase | Morganella morganii S5 |
18 | group_897 | HKOGLL_06660 | 140641 | 142152 | 1 | xylB | xylulokinase | Morganella morganii S5 |
19 | group_1764 | HKOGLL_14605 | 101801 | 103327 | 1 | glpK | glycerol kinase GlpK | Morganella morganii S5 |
20 | group_603 | F4V73_RS04185 | 884416 | 886050 | -1 | FGGY-family carbohydrate kinase | Morganella psychrotolerans | |
21 | group_2522 | F4V73_RS04570 | 966411 | 968003 | 1 | lsrK | autoinducer-2 kinase | Morganella psychrotolerans |
22 | group_897 | F4V73_RS09170 | 1919472 | 1920983 | 1 | xylB | xylulokinase | Morganella psychrotolerans |
23 | group_1764 | F4V73_RS17105 | 49176 | 50702 | 1 | glpK | glycerol kinase GlpK | Morganella psychrotolerans |
24 | group_897 | PMI_RS06145 | 1347291 | 1348745 | -1 | xylB | xylulokinase | Proteus mirabilis HI4320 |
25 | group_603 | PMI_RS14540 | 3224012 | 3225598 | -1 | FGGY-family carbohydrate kinase | Proteus mirabilis HI4320 | |
26 | group_1764 | PMI_RS15875 | 3524383 | 3525915 | -1 | glpK | glycerol kinase GlpK | Proteus mirabilis HI4320 |