PF02780


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02780, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02780
Description Transketolase, C-terminal domain

Occurence in the database

PF02780 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2252 FBDBKF_17360 2630 4498 1 dxs 1-deoxy-D-xylulose-5-phosphate synthase Morganella morganii S1
1 group_2252 EHELCC_17255 2630 4498 1 dxs 1-deoxy-D-xylulose-5-phosphate synthase Morganella morganii S2
2 group_2252 NLDBIP_17940 38298 40166 -1 dxs 1-deoxy-D-xylulose-5-phosphate synthase Morganella morganii S4
3 group_2252 LHKJJB_17860 38296 40164 -1 dxs 1-deoxy-D-xylulose-5-phosphate synthase Morganella morganii S3
4 group_2252 HKOGLL_17870 38296 40164 -1 dxs 1-deoxy-D-xylulose-5-phosphate synthase Morganella morganii S5
5 group_2252 F4V73_RS16535 126304 128172 1 dxs 1-deoxy-D-xylulose-5-phosphate synthase Morganella psychrotolerans
6 group_2252 PMI_RS00450 120570 122444 -1 dxs 1-deoxy-D-xylulose-5-phosphate synthase Proteus mirabilis HI4320