PF02779


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02779, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02779
Description Transketolase, pyrimidine binding domain

Occurence in the database

PF02779 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1519 FBDBKF_09820 58688 61492 -1 sucA 2-oxoglutarate dehydrogenase E1 component Morganella morganii S1
1 group_1863 FBDBKF_13920 77592 79586 -1 tkt transketolase Morganella morganii S1
2 group_2252 FBDBKF_17360 2630 4498 1 dxs 1-deoxy-D-xylulose-5-phosphate synthase Morganella morganii S1
3 group_1519 EHELCC_04620 250653 253457 -1 sucA 2-oxoglutarate dehydrogenase E1 component Morganella morganii S2
4 group_1863 EHELCC_11590 162468 164462 -1 tkt transketolase Morganella morganii S2
5 group_2252 EHELCC_17255 2630 4498 1 dxs 1-deoxy-D-xylulose-5-phosphate synthase Morganella morganii S2
6 group_1519 NLDBIP_04620 250449 253253 -1 sucA 2-oxoglutarate dehydrogenase E1 component Morganella morganii S4
7 group_1863 NLDBIP_11935 162468 164462 -1 tkt transketolase Morganella morganii S4
8 group_2252 NLDBIP_17940 38298 40166 -1 dxs 1-deoxy-D-xylulose-5-phosphate synthase Morganella morganii S4
9 group_1863 LHKJJB_11795 162468 164462 -1 tkt transketolase Morganella morganii S3
10 group_1519 LHKJJB_14010 82125 84929 1 sucA 2-oxoglutarate dehydrogenase E1 component Morganella morganii S3
11 group_2252 LHKJJB_17860 38296 40164 -1 dxs 1-deoxy-D-xylulose-5-phosphate synthase Morganella morganii S3
12 group_1863 HKOGLL_10405 162468 164462 -1 tkt transketolase Morganella morganii S5
13 group_1519 HKOGLL_12525 59469 62273 -1 sucA 2-oxoglutarate dehydrogenase E1 component Morganella morganii S5
14 group_2252 HKOGLL_17870 38296 40164 -1 dxs 1-deoxy-D-xylulose-5-phosphate synthase Morganella morganii S5
15 group_1519 F4V73_RS00525 111011 113833 1 sucA 2-oxoglutarate dehydrogenase E1 component Morganella psychrotolerans
16 group_1863 F4V73_RS12780 156417 158411 -1 tkt transketolase Morganella psychrotolerans
17 group_2252 F4V73_RS16535 126304 128172 1 dxs 1-deoxy-D-xylulose-5-phosphate synthase Morganella psychrotolerans
18 group_2252 PMI_RS00450 120570 122444 -1 dxs 1-deoxy-D-xylulose-5-phosphate synthase Proteus mirabilis HI4320
19 group_1863 PMI_RS01165 286327 288321 1 tkt transketolase Proteus mirabilis HI4320
20 group_1519 PMI_RS02800 613789 616593 1 sucA 2-oxoglutarate dehydrogenase E1 component Proteus mirabilis HI4320