PF02706


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02706, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02706
Description Chain length determinant protein

Occurence in the database

PF02706 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1329 FBDBKF_08225 22844 23899 1 wzzE ECA polysaccharide chain length modulation protein Morganella morganii S1
1 group_2137 FBDBKF_16035 61234 62223 1 wzzB LPS O-antigen chain length determinant protein, WzzB/FepE family Morganella morganii S1
2 group_1329 EHELCC_13300 139826 140881 -1 wzzE ECA polysaccharide chain length modulation protein Morganella morganii S2
3 group_2137 EHELCC_18640 18668 19657 1 wzzB LPS O-antigen chain length determinant protein, WzzB/FepE family Morganella morganii S2
4 group_1329 NLDBIP_13640 139826 140881 -1 wzzE ECA polysaccharide chain length modulation protein Morganella morganii S4
5 group_2137 NLDBIP_17470 48673 49662 1 wzzB LPS O-antigen chain length determinant protein, WzzB/FepE family Morganella morganii S4
6 group_1329 LHKJJB_12915 21562 22617 1 wzzE ECA polysaccharide chain length modulation protein Morganella morganii S3
7 group_2137 LHKJJB_17190 6526 7515 -1 wzzB LPS O-antigen chain length determinant protein, WzzB/FepE family Morganella morganii S3
8 group_1329 HKOGLL_12115 139826 140881 -1 wzzE ECA polysaccharide chain length modulation protein Morganella morganii S5
9 group_2137 HKOGLL_17205 48673 49662 1 wzzB LPS O-antigen chain length determinant protein, WzzB/FepE family Morganella morganii S5
10 group_2137 F4V73_RS16275 67602 68591 -1 Wzz/FepE/Etk N-terminal domain-containing protein Morganella psychrotolerans
11 group_1329 F4V73_RS18775 24007 25062 1 wzzE ECA polysaccharide chain length modulation protein Morganella psychrotolerans
12 group_2137 PMI_RS10755 2367388 2368506 -1 wzz(fepE) LPS O-antigen length regulator Wzz(fepE) Proteus mirabilis HI4320
13 group_1329 PMI_RS16485 3636211 3637269 1 wzzE ECA polysaccharide chain length modulation protein Proteus mirabilis HI4320