Orthogroup:group_2174


Homologs in group_2174

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_16355 FBDBKF_16355 Morganella morganii S1 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
EHELCC_16390 EHELCC_16390 Morganella morganii S2 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
NLDBIP_16950 NLDBIP_16950 Morganella morganii S4 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
LHKJJB_16870 LHKJJB_16870 Morganella morganii S3 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
HKOGLL_16970 HKOGLL_16970 Morganella morganii S5 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
F4V73_RS17220 F4V73_RS17220 Morganella psychrotolerans trmL tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL
PMI_RS15760 PMI_RS15760 Proteus mirabilis HI4320 trmL tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL

Distribution of group_2174 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2174 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2174

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2174.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 trmL 7

Product

# Product Occurence
1 tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL 5
2 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0219 7 J Translation, ribosomal structure and biogenesis (J) tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03216 7 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00588 7 SpoU rRNA Methylase family

Annotations of the 31 SwissProt hits

Annotation Number of occurrences
Putative RNA (cytidine(34)-2'-O)-methyltransferase 1
Putative tRNA (cytidine(34)-2'-O)-methyltransferase 9
tRNA (cytidine(34)-2'-O)-methyltransferase 16
tRNA (guanosine(18)-2'-O)-methyltransferase 5

Protein length

Unique protein length 167

Protein length distribution