PF02482


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02482, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02482
Description Sigma 54 modulation protein / S30EA ribosomal protein

Occurence in the database

PF02482 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_736 FBDBKF_03255 52111 52398 1 hpf ribosome hibernation promoting factor Morganella morganii S1
1 group_2048 FBDBKF_15350 78454 78798 -1 raiA ribosome-associated translation inhibitor RaiA Morganella morganii S1
2 group_736 EHELCC_07280 194705 194992 -1 hpf ribosome hibernation promoting factor Morganella morganii S2
3 group_2048 EHELCC_10895 6108 6452 1 raiA ribosome-associated translation inhibitor RaiA Morganella morganii S2
4 group_736 NLDBIP_07605 194578 194865 -1 hpf ribosome hibernation promoting factor Morganella morganii S4
5 group_2048 NLDBIP_11240 6108 6452 1 raiA ribosome-associated translation inhibitor RaiA Morganella morganii S4
6 group_736 LHKJJB_07140 158324 158611 -1 hpf ribosome hibernation promoting factor Morganella morganii S3
7 group_2048 LHKJJB_11100 6108 6452 1 raiA ribosome-associated translation inhibitor RaiA Morganella morganii S3
8 group_736 HKOGLL_03790 74776 75063 1 hpf ribosome hibernation promoting factor Morganella morganii S5
9 group_2048 HKOGLL_09710 6108 6452 1 raiA ribosome-associated translation inhibitor RaiA Morganella morganii S5
10 group_736 F4V73_RS11665 484247 484534 -1 hpf ribosome hibernation promoting factor Morganella psychrotolerans
11 group_2048 F4V73_RS12105 6182 6526 1 raiA ribosome-associated translation inhibitor RaiA Morganella psychrotolerans
12 group_2048 PMI_RS01900 446485 446820 -1 raiA ribosome-associated translation inhibitor RaiA Proteus mirabilis HI4320
13 group_736 PMI_RS18145 3984975 3985262 -1 hpf ribosome hibernation promoting factor Proteus mirabilis HI4320