Homologs in group_2088

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15350 FBDBKF_15350 100.0 Morganella morganii S1 raiA ribosome-associated translation inhibitor RaiA
EHELCC_10895 EHELCC_10895 100.0 Morganella morganii S2 raiA ribosome-associated translation inhibitor RaiA
LHKJJB_11100 LHKJJB_11100 100.0 Morganella morganii S3 raiA ribosome-associated translation inhibitor RaiA
HKOGLL_09710 HKOGLL_09710 100.0 Morganella morganii S5 raiA ribosome-associated translation inhibitor RaiA
F4V73_RS12105 F4V73_RS12105 89.5 Morganella psychrotolerans raiA ribosome-associated translation inhibitor RaiA
PMI_RS01900 PMI_RS01900 73.9 Proteus mirabilis HI4320 raiA ribosome-associated translation inhibitor RaiA

Distribution of the homologs in the orthogroup group_2088

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2088

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AD52 8.77e-57 174 75 0 111 3 yfiA Ribosome-associated factor Y Shigella flexneri
P0AD49 8.77e-57 174 75 0 111 1 raiA Ribosome-associated inhibitor A Escherichia coli (strain K12)
P0AD50 8.77e-57 174 75 0 111 3 yfiA Ribosome-associated factor Y Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AD51 8.77e-57 174 75 0 111 3 yfiA Ribosome-associated factor Y Escherichia coli O157:H7
P71346 1.67e-44 143 65 0 104 1 yfiA Ribosome-associated factor Y Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0A148 6.75e-14 65 36 0 94 3 hpf Ribosome hibernation promoting factor Pseudomonas putida
P0A147 6.75e-14 65 36 0 94 3 hpf Ribosome hibernation promoting factor Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
P26983 4.59e-13 63 37 0 91 3 hpf Ribosome hibernation promoting factor Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P17161 7.71e-13 62 38 0 91 3 hpf Ribosome hibernation promoting factor Klebsiella oxytoca
P17160 8.76e-13 62 35 0 91 3 hpf Ribosome hibernation promoting factor Azotobacter vinelandii
P0AFX3 1.37e-12 61 38 0 91 3 hpf Ribosome hibernation promoting factor Shigella flexneri
P0AFX0 1.37e-12 61 38 0 91 1 hpf Ribosome hibernation promoting factor Escherichia coli (strain K12)
P0AFX1 1.37e-12 61 38 0 91 3 hpf Ribosome hibernation promoting factor Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFX2 1.37e-12 61 38 0 91 3 hpf Ribosome hibernation promoting factor Escherichia coli O157:H7
A0A0H3GEZ8 1.4e-09 55 35 3 99 1 hpf Ribosome hibernation promotion factor Listeria monocytogenes serotype 1/2a (strain 10403S)
P33987 1.5e-08 52 32 2 97 3 hpf Ribosome hibernation promoting factor Acinetobacter guillouiae
P28613 2.08e-08 51 29 2 91 3 hpf Ribosome hibernation promoting factor Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q9RVE7 2.72e-07 50 30 1 89 1 hpf Ribosome hibernation promotion factor Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
P28368 6.23e-07 48 34 4 100 1 yvyD Ribosome hibernation promotion factor Bacillus subtilis (strain 168)
A2RIX0 1.01e-06 48 29 3 116 1 hpf Ribosome hibernation promotion factor Lactococcus lactis subsp. cremoris (strain MG1363)
Q4L4H7 8.47e-06 45 30 2 92 3 hpf Ribosome hibernation promotion factor Staphylococcus haemolyticus (strain JCSC1435)
P47995 3.41e-05 44 28 2 94 3 hpf Ribosome hibernation promotion factor Staphylococcus carnosus (strain TM300)
Q8CTF2 0.000111 42 30 2 88 3 hpf Ribosome hibernation promotion factor Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HQX7 0.000111 42 30 2 88 3 hpf Ribosome hibernation promotion factor Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q5XAQ7 0.000271 41 27 2 97 1 hpf Ribosome hibernation promotion factor Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
Q7A1G5 0.000466 41 30 2 90 3 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain MW2)
Q6GB78 0.000466 41 30 2 90 3 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain MSSA476)
Q6GIN9 0.000466 41 30 2 90 3 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain MRSA252)
Q7A6R6 0.000466 41 30 2 90 1 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain N315)
Q99VM3 0.000466 41 30 2 90 3 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q2YSH7 0.000466 41 30 2 90 1 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2G055 0.000466 41 30 2 90 1 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FIN9 0.000466 41 30 2 90 1 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain USA300)
Q5HHR8 0.000484 40 30 2 90 3 hpf Ribosome hibernation promotion factor Staphylococcus aureus (strain COL)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_11240
Feature type CDS
Gene raiA
Product ribosome-associated translation inhibitor RaiA
Location 6108 - 6452 (strand: 1)
Length 345 (nucleotides) / 114 (amino acids)
In genomic island -

Contig

Accession ZDB_526
Length 188522 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2088
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02482 Sigma 54 modulation protein / S30EA ribosomal protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1544 Translation, ribosomal structure and biogenesis (J) J Ribosome-associated translation inhibitor RaiA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05809 ribosome-associated inhibitor A - -

Protein Sequence

MNVNITSKQMEITPAIREHVENRLDKLSKWQVPLINPHIILAKDPQGFVVDATISTPNGNLVASAKHADMYAAINELLAKLERQLNKAQHKGEARRADNSVKEANLVSDEESAE

Flanking regions ( +/- flanking 50bp)

TCAACGTATTCTGAGTATCAACAAGACGGATGTAACAAAGAGAGGTCACTATGAATGTGAATATCACCAGTAAGCAAATGGAGATCACCCCGGCAATCCGGGAGCATGTTGAAAACCGTCTCGATAAGCTGAGTAAGTGGCAGGTTCCTTTAATTAACCCGCACATTATCCTCGCGAAAGATCCGCAGGGATTTGTGGTTGATGCCACCATCAGCACACCGAATGGAAATTTAGTTGCCAGCGCCAAACACGCTGATATGTACGCCGCCATCAATGAATTACTGGCGAAACTGGAACGGCAGCTGAATAAAGCACAGCACAAAGGTGAAGCGCGCCGCGCGGATAACAGTGTTAAAGAAGCCAACCTTGTGTCTGATGAAGAATCCGCAGAATAAAAAATATAATAAATTGAGTTTTGTCTCTGCGCGCCCTCCGGGCGCGTTTT