PF02316


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02316, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02316
Description Mu DNA-binding domain

Occurence in the database

PF02316 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_306 FBDBKF_08585 99900 100286 1 DNA-binding protein Morganella morganii S1
1 group_306 EHELCC_12940 63439 63825 -1 DNA-binding protein Morganella morganii S2
2 group_306 NLDBIP_13280 63439 63825 -1 DNA-binding protein Morganella morganii S4
3 group_306 LHKJJB_13275 98618 99004 1 DNA-binding protein Morganella morganii S3
4 group_306 HKOGLL_11755 63439 63825 -1 DNA-binding protein Morganella morganii S5
5 group_306 F4V73_RS09810 66483 66875 1 DNA-binding protein Morganella psychrotolerans
6 group_306 PMI_RS16935 3729806 3730153 1 DNA-binding protein Proteus mirabilis HI4320
7 group_306 PMI_RS16940 3730232 3730648 1 DNA-binding protein Proteus mirabilis HI4320