Homologs in group_306

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08585 FBDBKF_08585 96.1 Morganella morganii S1 - DNA-binding protein
EHELCC_12940 EHELCC_12940 96.1 Morganella morganii S2 - DNA-binding protein
NLDBIP_13280 NLDBIP_13280 96.1 Morganella morganii S4 - DNA-binding protein
LHKJJB_13275 LHKJJB_13275 96.1 Morganella morganii S3 - DNA-binding protein
HKOGLL_11755 HKOGLL_11755 96.1 Morganella morganii S5 - DNA-binding protein
PMI_RS16935 PMI_RS16935 39.1 Proteus mirabilis HI4320 - DNA-binding protein
PMI_RS16940 PMI_RS16940 72.9 Proteus mirabilis HI4320 - DNA-binding protein

Distribution of the homologs in the orthogroup group_306

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_306

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P07636 2.36e-09 57 46 1 58 1 A DDE-recombinase A Escherichia phage Mu
P07040 4.01e-08 52 30 2 111 2 repc Repressor c protein Escherichia phage D108
P06019 7.97e-07 49 37 3 86 1 repc Repressor protein c Escherichia phage Mu

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09810
Feature type CDS
Gene -
Product DNA-binding protein
Location 66483 - 66875 (strand: 1)
Length 393 (nucleotides) / 130 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_306
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF02316 Mu DNA-binding domain

Protein Sequence

MKKEWYSAKELVGLAGLPSSPQGVNLMARREGWHQRRKRGVQGKAVEYSVDSLPDEVQAILHACDNSASYQAKRQDAFLIWVEAYYQLTREEREKIVTFILREGLAQLIQHLDAHELHLPGNREQDEKPE

Flanking regions ( +/- flanking 50bp)

TAGCACTTAGAGAGCCAGTTTTTTGCTGAAAATGGGTTGCAGGAGAAAAGATGAAAAAAGAATGGTATTCCGCGAAGGAATTGGTTGGTTTGGCGGGCTTGCCATCATCTCCTCAAGGTGTCAACCTGATGGCGAGACGGGAAGGCTGGCATCAGCGGCGTAAACGCGGTGTGCAGGGTAAAGCGGTTGAATACAGCGTGGATAGCCTGCCGGATGAAGTCCAGGCTATTTTGCATGCATGCGATAACAGCGCAAGTTACCAGGCGAAGCGGCAGGATGCGTTTCTGATATGGGTGGAAGCCTATTATCAGCTGACCCGCGAGGAGCGGGAGAAGATTGTGACATTTATCCTGCGGGAAGGGCTGGCTCAGTTGATCCAGCATCTCGATGCACATGAGCTTCATCTTCCGGGGAACCGGGAGCAGGACGAAAAGCCGGAATAGTAAAACGGGATCCTCAAAAGGATCCCGTTTGCTTATGGTCAGGCGGAGCG