PF02028


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02028, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 9 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02028
Description BCCT, betaine/carnitine/choline family transporter

Occurence in the database

PF02028 is associated with 9 different proteins (see tab "Protein list" and "Profile")
The 9 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_213 FBDBKF_13810 54559 56559 1 betT Choline-glycine betaine transporter Morganella morganii S1
1 group_213 EHELCC_11480 139435 141435 1 betT Choline-glycine betaine transporter Morganella morganii S2
2 group_213 NLDBIP_11825 139435 141435 1 betT Choline-glycine betaine transporter Morganella morganii S4
3 group_213 LHKJJB_11685 139435 141435 1 betT Choline-glycine betaine transporter Morganella morganii S3
4 group_213 HKOGLL_10295 139435 141435 1 betT Choline-glycine betaine transporter Morganella morganii S5
5 group_213 F4V73_RS12675 132943 134943 1 betT choline BCCT transporter BetT Morganella psychrotolerans
6 group_213 PMI_RS01210 296280 298283 -1 betT choline BCCT transporter BetT Proteus mirabilis HI4320
7 group_213 PMI_RS07075 1543702 1545744 1 choline transporter Proteus mirabilis HI4320
8 group_213 PMI_RS13075 2902504 2904048 1 caiT L-carnitine/gamma-butyrobetaine antiporter Proteus mirabilis HI4320