Homologs in group_213

Help

8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13810 FBDBKF_13810 27.0 Morganella morganii S1 betT Choline-glycine betaine transporter
EHELCC_11480 EHELCC_11480 27.0 Morganella morganii S2 betT Choline-glycine betaine transporter
NLDBIP_11825 NLDBIP_11825 27.0 Morganella morganii S4 betT Choline-glycine betaine transporter
LHKJJB_11685 LHKJJB_11685 27.0 Morganella morganii S3 betT Choline-glycine betaine transporter
HKOGLL_10295 HKOGLL_10295 27.0 Morganella morganii S5 betT Choline-glycine betaine transporter
F4V73_RS12675 F4V73_RS12675 27.8 Morganella psychrotolerans betT choline BCCT transporter BetT
PMI_RS01210 PMI_RS01210 27.6 Proteus mirabilis HI4320 betT choline BCCT transporter BetT
PMI_RS07075 PMI_RS07075 26.8 Proteus mirabilis HI4320 - choline transporter

Distribution of the homologs in the orthogroup group_213

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_213

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
B4EY22 0.0 1040 100 0 514 1 caiT L-carnitine/gamma-butyrobetaine antiporter Proteus mirabilis (strain HI4320)
P59334 0.0 1013 99 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Proteus sp. (strain LE138)
Q8ZRX1 0.0 917 88 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B4TWR7 0.0 917 88 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Salmonella schwarzengrund (strain CVM19633)
C0Q4L6 0.0 917 88 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Salmonella paratyphi C (strain RKS4594)
A9MYK0 0.0 917 88 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4T6J9 0.0 917 88 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Salmonella newport (strain SL254)
B4TIH3 0.0 917 88 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Salmonella heidelberg (strain SL476)
B5R1R3 0.0 917 88 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Salmonella enteritidis PT4 (strain P125109)
B5FHG8 0.0 917 88 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Salmonella dublin (strain CT_02021853)
B5F753 0.0 917 88 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Salmonella agona (strain SL483)
A9MQH4 0.0 917 88 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
Q57TI7 0.0 916 88 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Salmonella choleraesuis (strain SC-B67)
B5BL58 0.0 915 88 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Salmonella paratyphi A (strain AKU_12601)
Q5PIN5 0.0 915 88 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B5RGA7 0.0 914 88 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Salmonella gallinarum (strain 287/91 / NCTC 13346)
Q8Z9L1 0.0 910 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Salmonella typhi
A8ALR3 0.0 908 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
P59333 0.0 908 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TLU9 0.0 908 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B7UI86 0.0 908 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q3Z5W8 0.0 907 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Shigella sonnei (strain Ss046)
B7LWN1 0.0 907 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
Q1RGF8 0.0 907 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli (strain UTI89 / UPEC)
B7N7R5 0.0 907 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
P31553 0.0 907 87 0 504 1 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli (strain K12)
A1A790 0.0 907 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli O1:K1 / APEC
A7ZVZ0 0.0 907 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli O9:H4 (strain HS)
B1XBG5 0.0 907 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli (strain K12 / DH10B)
C4ZPW6 0.0 907 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli (strain K12 / MC4100 / BW2952)
B7L4G3 0.0 907 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli (strain 55989 / EAEC)
B7MAG3 0.0 907 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli O45:K1 (strain S88 / ExPEC)
A7ZHD1 0.0 907 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli O139:H28 (strain E24377A / ETEC)
B6HYZ1 0.0 906 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli (strain SE11)
B7MNP7 0.0 906 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli O81 (strain ED1a)
B1LFX3 0.0 906 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli (strain SMS-3-5 / SECEC)
B1IRD6 0.0 906 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
B7NHE4 0.0 906 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli O7:K1 (strain IAI39 / ExPEC)
P59335 0.0 905 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Shigella flexneri
B7M0D7 0.0 905 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli O8 (strain IAI1)
B5YYD4 0.0 903 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8XA30 0.0 903 87 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Escherichia coli O157:H7
Q0T8F4 0.0 899 86 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Shigella flexneri serotype 5b (strain 8401)
Q32K57 0.0 897 86 0 504 3 caiT L-carnitine/gamma-butyrobetaine antiporter Shigella dysenteriae serotype 1 (strain Sd197)
P0ABD1 8.66e-67 226 29 5 445 3 yeaV Uncharacterized transporter YeaV Escherichia coli (strain K12)
P0ABD2 8.66e-67 226 29 5 445 3 yeaV Uncharacterized transporter YeaV Escherichia coli O157:H7
D0C9N4 1.84e-65 224 31 2 431 3 HMPREF0010_01347 Carnitine transporter Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / JCM 6841 / CCUG 19606 / CIP 70.34 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
P54417 1.37e-59 207 30 9 493 1 opuD Glycine betaine transporter OpuD Bacillus subtilis (strain 168)
Q24SP9 4e-55 195 30 8 467 2 DSY3154 Probable glycine betaine transporter Desulfitobacterium hafniense (strain Y51)
Q9X4A5 9.52e-55 194 30 10 476 1 betL Glycine betaine transporter BetL Listeria monocytogenes
A0A0B5RUB0 5.48e-50 182 30 11 502 2 tmaT Trimethylamine transporter Myroides profundi
Q87J97 1.06e-46 173 26 5 463 1 VPA0356 Glycine betaine transporter 2 Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q6FDF6 1.76e-46 172 27 10 510 1 betT1 Osmo-independent choline transporter BetT1 Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q6FDF5 2.23e-46 175 27 17 534 1 betT2 Osmo-dependent choline transporter BetT2 Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q87PP5 6.98e-46 172 27 14 484 1 VP1456 Glycine betaine/proline/choline/ectoine transporter VP1456 Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q8NN75 1.82e-45 172 29 13 467 1 lcoP Betaine/ectoine transporter LcoP Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
G3XCN6 1.3e-44 170 27 9 490 1 betS Glycine betaine/proline betaine transporter BetS Rhizobium meliloti
Q6F754 9.16e-43 164 26 12 509 1 ACIAD3460 Glycine betaine transporter Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P54582 1.25e-42 163 28 14 514 1 betP Glycine betaine transporter BetP Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
Q93AK1 1.93e-42 161 26 10 500 1 ectT Ectoine/hydroxyectoine transporter Virgibacillus pantothenticus
P0ABC9 4.78e-41 160 26 12 518 1 betT High-affinity choline transport protein Escherichia coli (strain K12)
P0ABD0 4.78e-41 160 26 12 518 3 betT High-affinity choline transport protein Escherichia coli O157:H7
Q87NG3 7.29e-41 157 28 12 450 1 VP1905 Glycine betaine transporter 1 Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q87NZ5 1.59e-40 157 27 11 443 1 VP1723 Glycine betaine/proline/choline transporter VP1723 Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q79VE0 6.87e-40 155 25 12 506 1 ectP Ectoine/glycine betaine/proline transporter EctP Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
P45335 6.3e-38 150 27 15 478 3 HI_1706 Uncharacterized transporter HI_1706 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P63696 2.44e-35 142 28 18 509 3 BQ2027_MB0941 Uncharacterized transporter Mb0941 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WPR7 2.44e-35 142 28 18 509 3 Rv0917 Uncharacterized transporter Rv0917 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WPR6 2.44e-35 142 28 18 509 3 MT0942 Uncharacterized transporter MT0942 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13075
Feature type CDS
Gene caiT
Product L-carnitine/gamma-butyrobetaine antiporter
Location 2902504 - 2904048 (strand: 1)
Length 1545 (nucleotides) / 514 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_213
Orthogroup size 9
N. genomes 7

Actions

Genomic region

Domains

PF02028 BCCT, betaine/carnitine/choline family transporter

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1292 Cell wall/membrane/envelope biogenesis (M) M Choline-glycine betaine transporter

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05245 L-carnitine/gamma-butyrobetaine antiporter - -

Protein Sequence

MSKDNKKAGIEPKVFFPPLIIVGILCWLTVRDLDASNEVINAVFSYVTNVWGWAFEWYMVIMFGGWFWLVFGRYAKKRLGDEKPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISSPPFGMEGYSAPAKEIGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLTPLVGEKHVNGLFGTVVDNFYLVALILAMGTSLGLATPLVTECIQYLFGIPHTLQLDAIIISCWILLNAICVAFGLQKGVKIASDVRTYLSFLMLGWVFIVGGASFIVNYFTDSVGTLLMYMPRMLFYTDPIGKGGFPQAWTVFYWAWWVIYAIQMSIFLARISKGRTVRELCLGMVSGLTAGTWLIWTILGGNTLQLIDQNILNIPQLIDQYGVPRAIIETWAALPLSTATMWGFFILCFIATVTLINACSYTLAMSTCRSMKEGAEPPLLVRIGWSVLVGIIGIILLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKVHWKDCSPYTQKMTH

Flanking regions ( +/- flanking 50bp)

AATTAACACTTATTAAACTTCTGCGCTAAATATATTTGGAAAATTTACCTATGAGCAAAGATAATAAAAAGGCAGGAATAGAACCGAAGGTTTTTTTTCCGCCATTAATCATTGTTGGTATTTTATGCTGGTTAACGGTACGCGATCTTGATGCTTCAAATGAAGTGATCAATGCCGTTTTCAGCTATGTTACCAATGTCTGGGGTTGGGCCTTCGAATGGTATATGGTGATCATGTTCGGGGGCTGGTTCTGGTTGGTTTTTGGACGTTATGCCAAAAAACGCCTTGGCGATGAGAAACCAGAATTTAGTACGGCAAGCTGGATCTTTATGATGTTTGCTTCTTGTACATCAGCAGCTGTGCTGTTTTGGGGCTCAATTGAAATATACTACTACATTTCAAGTCCTCCTTTCGGTATGGAAGGTTACTCCGCACCAGCCAAAGAGATAGGGTTAGCTTACAGCTTATTCCACTGGGGCCCGCTACCTTGGGCAACCTATAGTTTCCTGTCTGTCGCCTTCGCTTACTTCTTTTTTGTGCGCAAAATGGAAGTGATCCGCCCAAGTAGCACTTTAACGCCATTAGTGGGTGAAAAACACGTTAATGGTTTATTTGGTACTGTCGTCGACAATTTCTATTTGGTCGCCTTGATCCTAGCAATGGGCACCAGCCTTGGGCTTGCAACGCCTTTGGTAACTGAATGTATTCAATACTTATTTGGTATTCCTCACACTCTACAATTAGATGCCATTATTATCTCTTGCTGGATCTTACTCAACGCTATTTGCGTGGCATTTGGTCTACAAAAAGGGGTAAAAATCGCCAGTGATGTGCGTACTTACCTGAGCTTCTTAATGTTAGGTTGGGTATTTATCGTGGGTGGTGCCAGCTTTATTGTCAATTACTTCACAGATTCTGTGGGTACATTGCTGATGTATATGCCACGTATGTTGTTTTACACCGATCCTATTGGTAAAGGGGGTTTTCCTCAAGCTTGGACTGTCTTCTATTGGGCTTGGTGGGTTATTTACGCCATTCAAATGAGTATCTTCTTAGCGCGTATTTCTAAAGGTCGTACTGTTCGTGAATTATGTTTAGGAATGGTATCAGGTTTAACCGCAGGAACTTGGCTGATTTGGACTATTCTGGGGGGTAACACTTTACAACTGATTGACCAAAATATCCTTAATATTCCGCAACTGATTGATCAATATGGTGTGCCACGCGCCATTATCGAAACATGGGCCGCTTTACCCCTCAGTACAGCAACCATGTGGGGCTTCTTTATTCTCTGCTTTATCGCCACCGTCACTTTAATCAATGCCTGCTCTTACACACTAGCAATGTCAACTTGTCGCTCCATGAAAGAAGGGGCTGAACCACCATTATTGGTACGCATCGGCTGGTCTGTATTAGTCGGTATTATCGGCATTATTTTACTAGCATTAGGCGGCTTAAAACCGATCCAAACCGCCATTATTGCCGGAGGATGCCCACTATTTTTCGTCAATATCATGGTCACCTTGTCCTTTATAAAAGATGCCAAAGTGCACTGGAAAGATTGCTCTCCCTATACGCAAAAAATGACACATTAAGAGGTTATTAACATGGATTTTAGATTGAATGATGAGCAGGAACTGTTTGT