Orthogroup:group_189


Homologs in group_189

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9 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08355 FBDBKF_08355 Morganella morganii S1 xerC tyrosine recombinase XerC
EHELCC_13170 EHELCC_13170 Morganella morganii S2 xerC tyrosine recombinase XerC
NLDBIP_13510 NLDBIP_13510 Morganella morganii S4 xerC tyrosine recombinase XerC
LHKJJB_13045 LHKJJB_13045 Morganella morganii S3 xerC tyrosine recombinase XerC
HKOGLL_11985 HKOGLL_11985 Morganella morganii S5 xerC tyrosine recombinase XerC
F4V73_RS09555 F4V73_RS09555 Morganella psychrotolerans xerC tyrosine recombinase XerC
PMI_RS05890 PMI_RS05890 Proteus mirabilis HI4320 - tyrosine-type recombinase/integrase
PMI_RS09895 PMI_RS09895 Proteus mirabilis HI4320 - tyrosine-type recombinase/integrase
PMI_RS16605 PMI_RS16605 Proteus mirabilis HI4320 xerC tyrosine recombinase XerC

Distribution of group_189 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_189 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_189

Orthogroup content: 9 members

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This page summarizes the annotation of all members of the orthologous group group_189.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 xerC 7
2 - 2

Product

# Product Occurence
1 tyrosine recombinase XerC 7
2 tyrosine-type recombinase/integrase 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4973 7 L Replication, recombination and repair (L) Site-specific recombinase XerC
COG4974 2 L Replication, recombination and repair (L) Site-specific recombinase XerD

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03733 7 integrase/recombinase XerC - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00589 9 Phage integrase family
PF02899 8 Phage integrase, N-terminal SAM-like domain

Annotations of the 378 SwissProt hits

Annotation Number of occurrences
ICEBs1 integrase 1
Integrase 5
Integrase/recombinase 3
Integrase/recombinase xerD homolog 1
Probable integrase/recombinase 1
Probable integrase/recombinase YoeC 1
Probable integrase/recombinase aq_aa09 1
Probable integrase/recombinase protein MJ0367 1
Probable site-specific recombinase in afa region 1
Prophage integrase IntD 1
Putative defective protein IntQ 1
Putative integrase 1
Putative integrase/recombinase y4eF 1
Putative integrase/recombinase y4gC 1
Putative integrase/recombinase y4qK 1
Putative integrase/recombinase y4rA 1
Putative integrase/recombinase y4rB 1
Putative integrase/recombinase y4rC 1
Putative integrase/recombinase y4rD 1
Putative integrase/recombinase y4rE 1
Putative integrase/recombinase y4rF 1
Putative tyrosine recombinase CA_C2066 1
Putative tyrosine recombinase TTE1313 1
Putative tyrosine recombinase XerC 2
Resolvase 2
TnP I resolvase 1
Transposase A from transposon Tn554 3
Transposase B from transposon PsiTn554 1
Transposase B from transposon Tn554 3
Transposase from transposon Tn1545 2
Transposase from transposon Tn916 1
Type 1 fimbriae regulatory protein FimB 2
Type 1 fimbriae regulatory protein FimE 3
Tyrosine recombinase EUBREC_2677 1
Tyrosine recombinase Synpcc7942_B2651 1
Tyrosine recombinase THA_404 1
Tyrosine recombinase Tlet_1492 1
Tyrosine recombinase UU222 1
Tyrosine recombinase XerA 7
Tyrosine recombinase XerC 199
Tyrosine recombinase XerC 1 1
Tyrosine recombinase XerC 2 1
Tyrosine recombinase XerC-like 1
Tyrosine recombinase XerD 68
Tyrosine recombinase XerH 2
Tyrosine recombinase XerS 41
Tyrosine recombinase slr0733 1
Virulence plasmid integrase pGP8-D 3

Protein length

Min length 305
Max length 330
Mean length (sd) 310.4 (10.3)
Median length 305.0

Protein length distribution