PF01943


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01943, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01943
Description Polysaccharide biosynthesis protein

Occurence in the database

PF01943 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1336 FBDBKF_08260 30180 31433 1 wzxE lipid III flippase WzxE Morganella morganii S1
1 group_3472 FBDBKF_16365 60091 61539 -1 O-antigen transporter Morganella morganii S1
2 group_1336 EHELCC_13265 132292 133545 -1 wzxE lipid III flippase WzxE Morganella morganii S2
3 group_3472 EHELCC_16400 60091 61539 -1 O-antigen transporter Morganella morganii S2
4 group_1336 NLDBIP_13605 132292 133545 -1 wzxE lipid III flippase WzxE Morganella morganii S4
5 group_3472 NLDBIP_16940 631 2079 1 O-antigen transporter Morganella morganii S4
6 group_1336 LHKJJB_12950 28898 30151 1 wzxE lipid III flippase WzxE Morganella morganii S3
7 group_3472 LHKJJB_16860 3733 5181 1 O-antigen transporter Morganella morganii S3
8 group_1336 HKOGLL_12080 132292 133545 -1 wzxE lipid III flippase WzxE Morganella morganii S5
9 group_3472 HKOGLL_16980 60091 61539 -1 O-antigen transporter Morganella morganii S5
10 group_1336 F4V73_RS18810 31341 32591 1 wzxE lipid III flippase WzxE Morganella psychrotolerans
11 group_4686 PMI_RS15795 3507798 3509018 -1 oligosaccharide flippase family protein Proteus mirabilis HI4320
12 group_1336 PMI_RS16520 3643577 3644833 1 wzxE lipid III flippase WzxE Proteus mirabilis HI4320