Homologs in group_3472

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16365 FBDBKF_16365 100.0 Morganella morganii S1 - O-antigen transporter
EHELCC_16400 EHELCC_16400 100.0 Morganella morganii S2 - O-antigen transporter
NLDBIP_16940 NLDBIP_16940 100.0 Morganella morganii S4 - O-antigen transporter
HKOGLL_16980 HKOGLL_16980 100.0 Morganella morganii S5 - O-antigen transporter

Distribution of the homologs in the orthogroup group_3472

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3472

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37746 6.31e-06 52 23 7 305 1 rfbX Putative O-antigen transporter Escherichia coli (strain K12)
P37781 9.89e-05 48 26 15 388 3 rfbE Putative O-antigen transporter Shigella flexneri

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_16860
Feature type CDS
Gene -
Product O-antigen transporter
Location 3733 - 5181 (strand: 1)
Length 1449 (nucleotides) / 482 (amino acids)

Contig

Accession ZDB_377
Length 65271 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3472
Orthogroup size 5
N. genomes 5

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Genomic region

Domains

PF01943 Polysaccharide biosynthesis protein
PF14667 Polysaccharide biosynthesis C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2244 Cell wall/membrane/envelope biogenesis (M) M Membrane protein involved in the export of O-antigen and teichoic acid

Protein Sequence

MKKSITLNGVYKLALNLFRFTLPALIIPYVYRTLSPDNIGSVNYAESIYSYFNALAVLGLSFYAIRELGKVRSNRLKSSFLFSNIFTINILLVTFSLFLYLLLIFFVIKDPKVQIISLVLALKLFLLAFDIEWVNESHEDYKFISIKTMLCRSVSLILMFFLITSSDNYLIYVWLNVFFDLINALFSFYYIVFYKKRVFFSFKLVRLNKLFSHFKRIASTLFLVDVGFLFFAFDKVALGAFVSNTEVAYFALSEKIIVLVVVISSTITQVTLPRLSILAKTNRAEFLLLINKIYTSLMMIVLPSFIGVYLMASEFLFIFGSYEFMPALDTIKIFSFYILFFSLLKILATQTLFALNKEKVYIILLIAFALVNAIVKLVFQGSINSSISILITLSLLLLMSIIIYFHIRNKEKIKIPIINKNICIYITGCLPMFFIPFLREHIHNVFIFSILSMIFSIFSYTIVLLFFKESISQSLIKKILKR

Flanking regions ( +/- flanking 50bp)

TATAGGAACCTTTGCAGAATAATTAAAAAACTAAAAACAAAAATATTAAAATGAAAAAATCGATAACCTTGAATGGTGTATATAAACTTGCTTTAAATTTATTCAGATTTACCTTACCAGCATTGATAATACCTTATGTATATAGAACATTATCACCTGATAACATCGGTTCTGTTAATTATGCTGAAAGTATATACTCATATTTTAATGCACTCGCCGTTCTCGGATTATCATTCTATGCCATAAGAGAACTAGGAAAAGTAAGAAGCAACAGATTAAAATCTTCTTTTTTATTTTCTAATATCTTTACTATCAATATACTTTTAGTTACCTTTTCGTTATTTCTATATTTATTACTAATCTTCTTTGTAATTAAAGATCCAAAAGTACAAATCATATCATTGGTTCTTGCTTTAAAGTTATTTTTGCTTGCATTTGATATTGAGTGGGTCAATGAGTCACATGAAGATTATAAATTTATTTCAATAAAAACAATGTTATGCCGCAGTGTATCATTGATTTTAATGTTTTTCCTTATTACATCATCTGACAATTATCTTATCTATGTCTGGCTGAATGTTTTCTTTGACCTAATAAATGCTCTTTTTTCTTTCTATTATATTGTTTTTTATAAAAAAAGAGTTTTTTTCTCATTCAAATTAGTTAGACTCAATAAGTTATTTTCACATTTTAAAAGGATAGCATCTACATTATTTTTAGTTGATGTTGGTTTTTTATTTTTTGCCTTTGATAAGGTTGCTCTGGGAGCATTTGTTTCTAATACTGAAGTGGCCTATTTTGCACTATCTGAAAAAATTATTGTCTTGGTAGTTGTTATTTCATCAACCATTACTCAAGTTACTTTACCCAGGTTATCTATACTTGCAAAAACTAACCGCGCGGAATTTTTATTGCTTATAAATAAAATATATACTTCCTTAATGATGATAGTATTACCATCTTTCATCGGTGTATATTTAATGGCTTCCGAATTTTTATTCATATTCGGCTCTTATGAGTTTATGCCAGCTCTCGATACTATAAAAATATTTTCATTCTACATACTATTTTTTTCACTATTAAAAATATTGGCTACTCAAACACTATTTGCACTTAACAAAGAAAAAGTATATATCATTCTTCTTATAGCTTTTGCTTTAGTAAATGCTATCGTGAAATTAGTTTTCCAAGGAAGTATAAATTCATCTATAAGTATTCTAATTACACTATCACTACTACTACTGATGTCAATTATCATTTACTTCCACATCAGAAATAAAGAAAAAATAAAAATACCTATTATTAACAAAAACATATGCATATATATCACTGGCTGCCTGCCTATGTTTTTTATTCCGTTTCTTCGTGAGCACATACATAATGTATTTATATTTTCTATTCTGTCTATGATCTTTTCTATATTTTCCTATACAATAGTACTATTGTTTTTTAAAGAATCTATTTCCCAATCTCTCATTAAAAAAATATTGAAACGATAAAATTACCCGGAGTTAAAATGATCATCATTATCGGCGGCTCAGGCTTCATT