PF01668


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01668, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01668
Description SmpB protein

Occurence in the database

PF01668 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2338 FBDBKF_18350 31752 32234 1 smpB SsrA-binding protein SmpB Morganella morganii S1
1 group_2338 EHELCC_18385 31625 32107 1 smpB SsrA-binding protein SmpB Morganella morganii S2
2 group_2338 NLDBIP_18310 31826 32308 1 smpB SsrA-binding protein SmpB Morganella morganii S4
3 group_2338 LHKJJB_18505 31664 32146 1 smpB SsrA-binding protein SmpB Morganella morganii S3
4 group_2338 HKOGLL_18240 31642 32124 1 smpB SsrA-binding protein SmpB Morganella morganii S5
5 group_2338 F4V73_RS01880 410416 410898 1 smpB SsrA-binding protein SmpB Morganella psychrotolerans
6 group_2338 PMI_RS09405 2050361 2050843 1 smpB SsrA-binding protein SmpB Proteus mirabilis HI4320