PF01656


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01656, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01656
Description CobQ/CobB/MinD/ParA nucleotide binding domain

Occurence in the database

PF01656 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3077 FBDBKF_18835 13074 14609 -1 cobQ cobyric acid synthase Morganella morganii S1
1 group_3093 FBDBKF_18915 25925 27310 -1 cobB cobyrinate a,c-diamide synthase Morganella morganii S1
2 group_3077 EHELCC_17030 13075 14610 -1 cobQ cobyric acid synthase Morganella morganii S2
3 group_3093 EHELCC_17110 25926 27311 -1 cobB cobyrinate a,c-diamide synthase Morganella morganii S2
4 group_3077 NLDBIP_18410 13074 14609 -1 cobQ cobyric acid synthase Morganella morganii S4
5 group_3093 NLDBIP_18490 25925 27310 -1 cobB cobyrinate a,c-diamide synthase Morganella morganii S4
6 group_3093 LHKJJB_09135 165019 166404 1 cobB cobyrinate a,c-diamide synthase Morganella morganii S3
7 group_3077 LHKJJB_09215 177720 179255 1 cobQ cobyric acid synthase Morganella morganii S3
8 group_3093 HKOGLL_08685 165019 166404 1 cobB cobyrinate a,c-diamide synthase Morganella morganii S5
9 group_3077 HKOGLL_08765 177720 179255 1 cobQ cobyric acid synthase Morganella morganii S5
10 group_3093 F4V73_RS13680 372560 373945 1 cobyrinate a,c-diamide synthase Morganella psychrotolerans
11 group_3077 F4V73_RS13760 385268 386803 1 cobyric acid synthase Morganella psychrotolerans
12 group_3866 PMI_RS18665 26868 27530 1 ArsA-related P-loop ATPase Proteus mirabilis HI4320