PF01641


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01641, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01641
Description SelR domain

Occurence in the database

PF01641 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_983 FBDBKF_05430 95002 95415 -1 msrB Peptide methionine sulfoxide reductase MsrB Morganella morganii S1
1 group_983 EHELCC_12160 86079 86492 1 msrB Peptide methionine sulfoxide reductase MsrB Morganella morganii S2
2 group_983 NLDBIP_12500 86034 86447 1 msrB Peptide methionine sulfoxide reductase MsrB Morganella morganii S4
3 group_983 LHKJJB_12360 86079 86492 1 msrB Peptide methionine sulfoxide reductase MsrB Morganella morganii S3
4 group_983 HKOGLL_10975 86079 86492 1 msrB Peptide methionine sulfoxide reductase MsrB Morganella morganii S5
5 group_983 F4V73_RS03865 819383 819784 1 msrB peptide-methionine (R)-S-oxide reductase MsrB Morganella psychrotolerans
6 group_983 PMI_RS07285 1595168 1595605 -1 msrB peptide-methionine (R)-S-oxide reductase MsrB Proteus mirabilis HI4320