PF01571


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01571, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01571
Description Aminomethyltransferase folate-binding domain

Occurence in the database

PF01571 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_821 FBDBKF_04120 8482 9465 1 ygfZ tRNA-modifying protein YgfZ Morganella morganii S1
1 group_257 FBDBKF_04140 13616 14710 -1 gcvT glycine cleavage system aminomethyltransferase GcvT Morganella morganii S1
2 group_821 EHELCC_05410 67939 68922 1 ygfZ tRNA-modifying protein YgfZ Morganella morganii S2
3 group_257 EHELCC_05430 73073 74167 -1 gcvT glycine cleavage system aminomethyltransferase GcvT Morganella morganii S2
4 group_821 NLDBIP_05730 109004 109987 1 ygfZ tRNA-modifying protein YgfZ Morganella morganii S4
5 group_257 NLDBIP_05750 114138 115232 -1 gcvT glycine cleavage system aminomethyltransferase GcvT Morganella morganii S4
6 group_821 LHKJJB_02610 86528 87511 1 ygfZ tRNA-modifying protein YgfZ Morganella morganii S3
7 group_257 LHKJJB_02630 91662 92756 -1 gcvT glycine cleavage system aminomethyltransferase GcvT Morganella morganii S3
8 group_821 HKOGLL_06085 8392 9375 1 ygfZ tRNA-modifying protein YgfZ Morganella morganii S5
9 group_257 HKOGLL_06105 13526 14620 -1 gcvT glycine cleavage system aminomethyltransferase GcvT Morganella morganii S5
10 group_821 F4V73_RS08560 1766763 1767746 1 ygfZ tRNA-modifying protein YgfZ Morganella psychrotolerans
11 group_257 F4V73_RS08585 1772945 1774039 -1 gcvT glycine cleavage system aminomethyltransferase GcvT Morganella psychrotolerans
12 group_821 PMI_RS09945 2155347 2156333 1 ygfZ tRNA-modifying protein YgfZ Proteus mirabilis HI4320
13 group_257 PMI_RS09965 2160470 2161564 -1 gcvT glycine cleavage system aminomethyltransferase GcvT Proteus mirabilis HI4320
14 group_257 PMI_RS14380 3191013 3192161 -1 aminomethyltransferase family protein Proteus mirabilis HI4320