Homologs in group_821

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04120 FBDBKF_04120 54.0 Morganella morganii S1 ygfZ tRNA-modifying protein YgfZ
EHELCC_05410 EHELCC_05410 54.0 Morganella morganii S2 ygfZ tRNA-modifying protein YgfZ
NLDBIP_05730 NLDBIP_05730 54.0 Morganella morganii S4 ygfZ tRNA-modifying protein YgfZ
LHKJJB_02610 LHKJJB_02610 54.0 Morganella morganii S3 ygfZ tRNA-modifying protein YgfZ
HKOGLL_06085 HKOGLL_06085 54.0 Morganella morganii S5 ygfZ tRNA-modifying protein YgfZ
F4V73_RS08560 F4V73_RS08560 55.2 Morganella psychrotolerans ygfZ tRNA-modifying protein YgfZ

Distribution of the homologs in the orthogroup group_821

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_821

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7N1C0 5.78e-147 419 61 1 318 3 plu3556 tRNA-modifying protein YgfZ Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A1JPM8 3.84e-132 382 59 3 314 3 YE3387 tRNA-modifying protein YgfZ Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
A8GIQ4 7.81e-132 381 59 3 322 3 Spro_3899 tRNA-modifying protein YgfZ Serratia proteamaculans (strain 568)
Q666S2 2.6e-131 380 58 3 320 3 YPTB3174 tRNA-modifying protein YgfZ Yersinia pseudotuberculosis serotype I (strain IP32953)
A7FF28 2.6e-131 380 58 3 320 3 YpsIP31758_0872 tRNA-modifying protein YgfZ Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
B1JNT4 3.13e-131 380 58 3 320 3 YPK_0875 tRNA-modifying protein YgfZ Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A4TIB4 3.13e-131 380 58 3 320 3 YPDSF_0617 tRNA-modifying protein YgfZ Yersinia pestis (strain Pestoides F)
Q1CF05 3.13e-131 380 58 3 320 3 YPN_3098 tRNA-modifying protein YgfZ Yersinia pestis bv. Antiqua (strain Nepal516)
A9R4L4 3.13e-131 380 58 3 320 3 YpAngola_A3840 tRNA-modifying protein YgfZ Yersinia pestis bv. Antiqua (strain Angola)
Q7CGT3 3.13e-131 380 58 3 320 3 YPO0898 tRNA-modifying protein YgfZ Yersinia pestis
Q1CB34 3.13e-131 380 58 3 320 3 YPA_0370 tRNA-modifying protein YgfZ Yersinia pestis bv. Antiqua (strain Antiqua)
B2K0P7 3.65e-131 379 58 3 320 3 YPTS_3305 tRNA-modifying protein YgfZ Yersinia pseudotuberculosis serotype IB (strain PB1/+)
B7N7E2 9.94e-129 373 59 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
B7NW39 1.04e-128 373 59 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B6I731 1.87e-128 372 59 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli (strain SE11)
B1LD99 1.89e-128 372 59 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli (strain SMS-3-5 / SECEC)
Q31WG0 2.02e-128 372 58 4 321 3 ygfZ tRNA-modifying protein YgfZ Shigella boydii serotype 4 (strain Sb227)
P0ADE9 2.14e-128 372 59 4 321 3 ygfZ tRNA-modifying protein YgfZ Shigella flexneri
Q0T0Z9 2.14e-128 372 59 4 321 3 ygfZ tRNA-modifying protein YgfZ Shigella flexneri serotype 5b (strain 8401)
P0ADE8 2.14e-128 372 59 4 321 1 ygfZ tRNA-modifying protein YgfZ Escherichia coli (strain K12)
A8A439 2.14e-128 372 59 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli O9:H4 (strain HS)
B1XEI5 2.14e-128 372 59 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli (strain K12 / DH10B)
C5A0H0 2.14e-128 372 59 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli (strain K12 / MC4100 / BW2952)
B7LYG2 2.14e-128 372 59 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli O8 (strain IAI1)
B7LF83 2.14e-128 372 59 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli (strain 55989 / EAEC)
A7ZR07 2.14e-128 372 59 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli O139:H28 (strain E24377A / ETEC)
Q3YXX2 2.41e-128 372 59 4 321 3 ygfZ tRNA-modifying protein YgfZ Shigella sonnei (strain Ss046)
Q0TDV3 3.98e-128 372 58 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B2U0R5 4.34e-128 372 58 4 321 3 ygfZ tRNA-modifying protein YgfZ Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
Q1R7D2 6.03e-128 371 58 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli (strain UTI89 / UPEC)
A1AF88 6.03e-128 371 58 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli O1:K1 / APEC
B7MZ51 6.03e-128 371 58 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli O81 (strain ED1a)
B7MM85 6.03e-128 371 58 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli O45:K1 (strain S88 / ExPEC)
B5YQ91 6.3e-128 371 59 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8XD41 6.3e-128 371 59 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli O157:H7
B7LPB2 1.21e-127 370 58 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
Q32BW1 2.94e-127 369 58 4 321 3 ygfZ tRNA-modifying protein YgfZ Shigella dysenteriae serotype 1 (strain Sd197)
Q8FE70 3e-127 369 58 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
B5BFL3 3.61e-127 369 57 4 321 3 ygfZ tRNA-modifying protein YgfZ Salmonella paratyphi A (strain AKU_12601)
A9N3M5 3.61e-127 369 57 4 321 3 ygfZ tRNA-modifying protein YgfZ Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PJF4 3.61e-127 369 57 4 321 3 ygfZ tRNA-modifying protein YgfZ Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4T543 3.61e-127 369 57 4 321 3 ygfZ tRNA-modifying protein YgfZ Salmonella newport (strain SL254)
B4TGW8 3.61e-127 369 57 4 321 3 ygfZ tRNA-modifying protein YgfZ Salmonella heidelberg (strain SL476)
B5RE09 3.61e-127 369 57 4 321 3 ygfZ tRNA-modifying protein YgfZ Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QXH5 3.61e-127 369 57 4 321 3 ygfZ tRNA-modifying protein YgfZ Salmonella enteritidis PT4 (strain P125109)
B5F5H2 3.61e-127 369 57 4 321 3 ygfZ tRNA-modifying protein YgfZ Salmonella agona (strain SL483)
B7UHU7 3.86e-127 369 58 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q8ZM80 4.8e-127 369 57 4 321 3 ygfZ tRNA-modifying protein YgfZ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B1ITA4 5.91e-127 369 58 4 321 3 ygfZ tRNA-modifying protein YgfZ Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
Q8Z3X4 9.55e-127 368 57 4 321 3 ygfZ tRNA-modifying protein YgfZ Salmonella typhi
B4TUR5 9.55e-127 368 57 4 321 3 ygfZ tRNA-modifying protein YgfZ Salmonella schwarzengrund (strain CVM19633)
A4WE49 5.79e-126 366 56 4 329 3 Ent638_3316 tRNA-modifying protein YgfZ Enterobacter sp. (strain 638)
B5FUG1 6.25e-126 366 57 4 321 3 ygfZ tRNA-modifying protein YgfZ Salmonella dublin (strain CT_02021853)
C0PY21 3.04e-125 364 57 4 321 3 ygfZ tRNA-modifying protein YgfZ Salmonella paratyphi C (strain RKS4594)
Q57K67 3.04e-125 364 57 4 321 3 ygfZ tRNA-modifying protein YgfZ Salmonella choleraesuis (strain SC-B67)
A9MRH6 1.33e-124 363 56 4 321 3 ygfZ tRNA-modifying protein YgfZ Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
A7MR73 6.5e-124 361 55 4 322 3 ESA_00433 tRNA-modifying protein YgfZ Cronobacter sakazakii (strain ATCC BAA-894)
B5XUE6 2.96e-121 354 57 4 321 3 KPK_0772 tRNA-modifying protein YgfZ Klebsiella pneumoniae (strain 342)
C6D8Y4 5.8e-118 346 53 3 322 3 PC1_0637 tRNA-modifying protein YgfZ Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Q6D961 1.5e-117 345 52 3 322 3 ECA0758 tRNA-modifying protein YgfZ Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
Q2NRF3 2.13e-114 337 51 3 319 3 SG1997 tRNA-modifying protein YgfZ Sodalis glossinidius (strain morsitans)
C5BAS5 1.78e-111 330 49 4 321 3 NT01EI_3346 tRNA-modifying protein YgfZ Edwardsiella ictaluri (strain 93-146)
C4K7V2 4.01e-95 288 46 4 309 3 HDEF_2079 tRNA-modifying protein YgfZ Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT)
Q1LTU6 2.11e-85 263 42 5 317 3 BCI_0149 tRNA-modifying protein YgfZ Baumannia cicadellinicola subsp. Homalodisca coagulata
Q8K9C6 2.66e-78 244 41 3 299 3 BUsg_420 tRNA-modifying protein YgfZ Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q6LMR1 1.06e-77 243 43 6 315 3 PBPRA3100 tRNA-modifying protein YgfZ Photobacterium profundum (strain SS9)
P57510 6.25e-76 238 40 4 297 3 BU435 tRNA-modifying protein YgfZ Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q5E304 5.95e-75 236 42 7 313 3 VF_2097 tRNA-modifying protein YgfZ Aliivibrio fischeri (strain ATCC 700601 / ES114)
B5FAI0 4.46e-73 231 41 7 313 3 VFMJ11_2202 tRNA-modifying protein YgfZ Aliivibrio fischeri (strain MJ11)
Q493E3 1e-72 231 38 4 312 3 BPEN_268 tRNA-modifying protein YgfZ Blochmanniella pennsylvanica (strain BPEN)
Q87LM8 2.11e-69 222 40 8 316 3 VP2583 tRNA-modifying protein YgfZ Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
A7MTS4 9.72e-68 218 38 7 325 3 VIBHAR_03546 tRNA-modifying protein YgfZ Vibrio campbellii (strain ATCC BAA-1116)
B6EKN9 9.95e-66 212 39 8 314 3 VSAL_I2535 tRNA-modifying protein YgfZ Aliivibrio salmonicida (strain LFI1238)
C3LR15 6.38e-65 210 37 7 318 3 VCM66_2395 tRNA-modifying protein YgfZ Vibrio cholerae serotype O1 (strain M66-2)
Q9KPA1 6.38e-65 210 37 7 318 3 VC_2472 tRNA-modifying protein YgfZ Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
B7VK90 8.26e-65 210 37 7 316 3 VS_2630 tRNA-modifying protein YgfZ Vibrio atlanticus (strain LGP32)
Q89AC3 1.28e-64 209 35 5 309 3 bbp_391 tRNA-modifying protein YgfZ Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8DC85 2.64e-63 206 40 8 325 3 VV1_1556 tRNA-modifying protein YgfZ Vibrio vulnificus (strain CMCP6)
A5F5F3 2.73e-63 206 36 6 315 3 VC0395_A2049 tRNA-modifying protein YgfZ Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
P44000 6.69e-62 201 39 7 307 4 HI_0466 Uncharacterized protein HI_0466 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q7MHM7 2.75e-61 201 38 7 325 3 VV2842 tRNA-modifying protein YgfZ Vibrio vulnificus (strain YJ016)
Q7VRF7 3.69e-59 196 35 7 310 3 Bfl260 tRNA-modifying protein YgfZ Blochmanniella floridana
Q47WN5 1.43e-52 179 32 4 321 3 CPS_4132 tRNA-modifying protein YgfZ Colwellia psychrerythraea (strain 34H / ATCC BAA-681)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS09945
Feature type CDS
Gene ygfZ
Product tRNA-modifying protein YgfZ
Location 2155347 - 2156333 (strand: 1)
Length 987 (nucleotides) / 328 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_821
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01571 Aminomethyltransferase folate-binding domain
PF21130 YgfZ, beta-barrel domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0354 Posttranslational modification, protein turnover, chaperones (O) O Folate-binding protein YgfZ, synthesis and repair of Fe-S clusters

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06980 tRNA-modifying protein YgfZ - -

Protein Sequence

MTQNSTQTKRPHAAINLPLTLISLDDWSLITATGADSEKYLQGQLTADIAALPTTEHTLAAHCEAKGKMWSTLRIFHQQAGFAYILRKNVAEKQLTELKKYAVFSKVTFTENTDAVLLGLAGQGAAQALAEFFPEIPRKANEVVNHQNSYLLQLPLPTERFLIVTDEETAKKLATTLPAETSDSDQWLALDIEAGYPIIDTPNIEQFLPQATNLQALPLSICFKKGCYTGQEMVSRAKFRGANKRAMYLLSGGAAQLPDIGGSVEWQLGEDKWRKTGTVLSAVRMADNTIIAEVVMNNDMDADSVFRVQGDTTSRLTIKPLPYSLEDE

Flanking regions ( +/- flanking 50bp)

CTCTTTTACCATAAACAGTGTATCGGATTAACTACATAGCGGGTGATGTCATGACTCAAAATTCTACTCAGACAAAACGCCCTCATGCCGCAATCAATTTACCACTCACCTTGATCTCTTTAGATGATTGGTCATTGATAACTGCAACAGGGGCTGATAGTGAAAAATACTTACAAGGCCAACTAACAGCGGATATTGCCGCATTACCGACTACAGAGCACACTTTAGCCGCTCATTGTGAAGCTAAAGGGAAAATGTGGAGTACATTGCGCATTTTCCATCAACAAGCAGGATTTGCTTATATATTGCGGAAAAATGTTGCTGAAAAACAACTTACTGAGCTTAAAAAATACGCCGTATTTTCAAAAGTGACTTTTACTGAAAATACAGATGCGGTGTTATTAGGACTTGCGGGGCAAGGCGCGGCACAAGCCTTAGCGGAATTCTTCCCTGAGATCCCCCGTAAAGCCAATGAAGTGGTTAATCACCAAAATAGCTACTTACTGCAACTCCCGTTACCTACAGAGCGCTTTTTAATTGTTACAGATGAAGAGACTGCCAAAAAACTAGCCACGACATTGCCCGCAGAAACCAGTGATAGTGACCAGTGGTTAGCCCTTGATATCGAGGCGGGTTATCCCATTATTGATACCCCTAATATCGAACAATTCTTACCACAAGCGACTAACTTACAAGCATTACCATTAAGTATTTGCTTTAAAAAAGGTTGCTATACAGGTCAAGAAATGGTGTCTCGTGCCAAATTCAGAGGCGCAAATAAACGTGCTATGTATCTGTTATCAGGTGGCGCAGCACAATTGCCCGACATTGGCGGTAGCGTTGAGTGGCAATTAGGTGAAGATAAATGGCGCAAAACAGGCACGGTATTAAGTGCGGTTCGTATGGCCGATAACACGATTATCGCCGAAGTGGTGATGAATAATGATATGGATGCTGACAGCGTATTTCGTGTCCAAGGTGATACCACCAGCCGCTTAACGATTAAACCTTTGCCTTACTCTTTAGAAGATGAGTGATAGCACTTCCATATGAACGGATTTTTATGACACAACAAACTAATGGGGCT