PF01555


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01555, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01555
Description DNA methylase

Occurence in the database

PF01555 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_161 FBDBKF_13170 23055 24113 -1 Methyltransferase Morganella morganii S1
1 group_161 EHELCC_19515 10490 11548 -1 Methyltransferase Morganella morganii S2
2 group_161 NLDBIP_09250 251078 252136 1 Methyltransferase Morganella morganii S4
3 group_161 NLDBIP_19070 4966 6024 -1 Methyltransferase Morganella morganii S4
4 group_161 LHKJJB_05015 5023 6081 -1 Methyltransferase Morganella morganii S3
5 group_161 LHKJJB_18960 4966 6024 -1 Methyltransferase Morganella morganii S3
6 group_161 HKOGLL_05900 235669 236727 1 Methyltransferase Morganella morganii S5
7 group_161 F4V73_RS02045 441416 442456 1 site-specific DNA-methyltransferase Morganella psychrotolerans
8 group_161 F4V73_RS19215 1157 2080 -1 site-specific DNA-methyltransferase Morganella psychrotolerans
9 group_161 PMI_RS04700 1035396 1036418 1 site-specific DNA-methyltransferase Proteus mirabilis HI4320
10 group_3911 PMI_RS15540 3456453 3458798 -1 restriction endonuclease Proteus mirabilis HI4320
11 group_3911 PMI_RS15545 3458799 3460334 -1 DNA methyltransferase Proteus mirabilis HI4320