PF01396
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01396, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 21 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF01396 |
Description |
Topoisomerase DNA binding C4 zinc finger |
Occurence in the database
PF01396 is associated with 21 different proteins (see tab "Protein list" and "Profile") |
The 21 proteins are classified into 3 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_940 |
FBDBKF_05115 |
29121 |
31709 |
-1 |
topA |
type I DNA topoisomerase |
Morganella morganii S1 |
1 |
group_2364 |
FBDBKF_19070 |
2577 |
3122 |
-1 |
|
Uncharacterized C-terminal domain of topoisomerase IA |
Morganella morganii S1 |
2 |
group_2434 |
FBDBKF_19750 |
13364 |
15418 |
1 |
topB |
DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains |
Morganella morganii S1 |
3 |
group_2434 |
EHELCC_10845 |
207133 |
209187 |
1 |
topB |
DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains |
Morganella morganii S2 |
4 |
group_940 |
EHELCC_12475 |
149785 |
152373 |
1 |
topA |
type I DNA topoisomerase |
Morganella morganii S2 |
5 |
group_2364 |
EHELCC_18815 |
2577 |
3122 |
-1 |
|
Uncharacterized C-terminal domain of topoisomerase IA |
Morganella morganii S2 |
6 |
group_2434 |
NLDBIP_11190 |
185404 |
187458 |
1 |
topB |
DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains |
Morganella morganii S4 |
7 |
group_940 |
NLDBIP_12815 |
149740 |
152328 |
1 |
topA |
type I DNA topoisomerase |
Morganella morganii S4 |
8 |
group_2364 |
NLDBIP_18830 |
2577 |
3122 |
-1 |
|
Uncharacterized C-terminal domain of topoisomerase IA |
Morganella morganii S4 |
9 |
group_2434 |
LHKJJB_10165 |
4070 |
6124 |
-1 |
topB |
DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains |
Morganella morganii S3 |
10 |
group_940 |
LHKJJB_12675 |
149785 |
152373 |
1 |
topA |
type I DNA topoisomerase |
Morganella morganii S3 |
11 |
group_2364 |
LHKJJB_18685 |
2577 |
3122 |
-1 |
|
Uncharacterized C-terminal domain of topoisomerase IA |
Morganella morganii S3 |
12 |
group_940 |
HKOGLL_11290 |
149785 |
152373 |
1 |
topA |
type I DNA topoisomerase |
Morganella morganii S5 |
13 |
group_2434 |
HKOGLL_16330 |
4079 |
6133 |
-1 |
topB |
DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains |
Morganella morganii S5 |
14 |
group_2364 |
HKOGLL_18420 |
2577 |
3122 |
-1 |
|
Uncharacterized C-terminal domain of topoisomerase IA |
Morganella morganii S5 |
15 |
group_940 |
F4V73_RS05570 |
1184169 |
1186769 |
-1 |
topA |
type I DNA topoisomerase |
Morganella psychrotolerans |
16 |
group_2364 |
F4V73_RS19095 |
27552 |
28070 |
1 |
|
topoisomerase DNA-binding C4 zinc finger domain-containing protein |
Morganella psychrotolerans |
17 |
group_940 |
PMI_RS06435 |
1411151 |
1413748 |
-1 |
topA |
type I DNA topoisomerase |
Proteus mirabilis HI4320 |
18 |
group_2434 |
PMI_RS12960 |
2874365 |
2876419 |
-1 |
|
DNA topoisomerase III |
Proteus mirabilis HI4320 |
19 |
group_2364 |
PMI_RS16320 |
3603180 |
3603737 |
1 |
|
type I DNA topoisomerase |
Proteus mirabilis HI4320 |
20 |
group_2434 |
PMI_RS18625 |
18144 |
20462 |
1 |
topB |
type IA DNA topoisomerase |
Proteus mirabilis HI4320 |