PF01396


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01396, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01396
Description Topoisomerase DNA binding C4 zinc finger

Occurence in the database

PF01396 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_940 FBDBKF_05115 29121 31709 -1 topA type I DNA topoisomerase Morganella morganii S1
1 group_2364 FBDBKF_19070 2577 3122 -1 Uncharacterized C-terminal domain of topoisomerase IA Morganella morganii S1
2 group_2434 FBDBKF_19750 13364 15418 1 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains Morganella morganii S1
3 group_2434 EHELCC_10845 207133 209187 1 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains Morganella morganii S2
4 group_940 EHELCC_12475 149785 152373 1 topA type I DNA topoisomerase Morganella morganii S2
5 group_2364 EHELCC_18815 2577 3122 -1 Uncharacterized C-terminal domain of topoisomerase IA Morganella morganii S2
6 group_2434 NLDBIP_11190 185404 187458 1 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains Morganella morganii S4
7 group_940 NLDBIP_12815 149740 152328 1 topA type I DNA topoisomerase Morganella morganii S4
8 group_2364 NLDBIP_18830 2577 3122 -1 Uncharacterized C-terminal domain of topoisomerase IA Morganella morganii S4
9 group_2434 LHKJJB_10165 4070 6124 -1 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains Morganella morganii S3
10 group_940 LHKJJB_12675 149785 152373 1 topA type I DNA topoisomerase Morganella morganii S3
11 group_2364 LHKJJB_18685 2577 3122 -1 Uncharacterized C-terminal domain of topoisomerase IA Morganella morganii S3
12 group_940 HKOGLL_11290 149785 152373 1 topA type I DNA topoisomerase Morganella morganii S5
13 group_2434 HKOGLL_16330 4079 6133 -1 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains Morganella morganii S5
14 group_2364 HKOGLL_18420 2577 3122 -1 Uncharacterized C-terminal domain of topoisomerase IA Morganella morganii S5
15 group_940 F4V73_RS05570 1184169 1186769 -1 topA type I DNA topoisomerase Morganella psychrotolerans
16 group_2364 F4V73_RS19095 27552 28070 1 topoisomerase DNA-binding C4 zinc finger domain-containing protein Morganella psychrotolerans
17 group_940 PMI_RS06435 1411151 1413748 -1 topA type I DNA topoisomerase Proteus mirabilis HI4320
18 group_2434 PMI_RS12960 2874365 2876419 -1 DNA topoisomerase III Proteus mirabilis HI4320
19 group_2364 PMI_RS16320 3603180 3603737 1 type I DNA topoisomerase Proteus mirabilis HI4320
20 group_2434 PMI_RS18625 18144 20462 1 topB type IA DNA topoisomerase Proteus mirabilis HI4320