Orthogroup:group_2398


Homologs in group_2398

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_19240 FBDBKF_19240 Morganella morganii S1 rplD 50S ribosomal protein L4
EHELCC_18985 EHELCC_18985 Morganella morganii S2 rplD 50S ribosomal protein L4
NLDBIP_19000 NLDBIP_19000 Morganella morganii S4 rplD 50S ribosomal protein L4
LHKJJB_18855 LHKJJB_18855 Morganella morganii S3 rplD 50S ribosomal protein L4
HKOGLL_18590 HKOGLL_18590 Morganella morganii S5 rplD 50S ribosomal protein L4
F4V73_RS18925 F4V73_RS18925 Morganella psychrotolerans rplD 50S ribosomal protein L4
PMI_RS16155 PMI_RS16155 Proteus mirabilis HI4320 rplD 50S ribosomal protein L4

Distribution of group_2398 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2398 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2398

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2398.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rplD 7

Product

# Product Occurence
1 50S ribosomal protein L4 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0088 7 J Translation, ribosomal structure and biogenesis (J) Ribosomal protein L4

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02926 7 large subunit ribosomal protein L4 Ribosome -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00573 7 Ribosomal protein L4/L1 family

Annotations of the 507 SwissProt hits

Annotation Number of occurrences
Large ribosomal subunit protein uL4 501
Large ribosomal subunit protein uL4c 6

Protein length

Unique protein length 201

Protein length distribution