PF01311


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01311, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01311
Description Bacterial export proteins, family 1

Occurence in the database

PF01311 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_462 FBDBKF_00650 107346 108131 1 fliR flagellar biosynthetic protein FliR Morganella morganii S1
1 group_314 FBDBKF_09300 92732 93493 -1 sctT type III secretion system export apparatus subunit SctT Morganella morganii S1
2 group_462 EHELCC_00895 200737 201522 -1 fliR flagellar biosynthetic protein FliR Morganella morganii S2
3 group_314 EHELCC_10110 52611 53372 1 sctT type III secretion system export apparatus subunit SctT Morganella morganii S2
4 group_462 NLDBIP_02565 478614 479399 1 fliR flagellar biosynthetic protein FliR Morganella morganii S4
5 group_314 NLDBIP_10455 30882 31643 1 sctT type III secretion system export apparatus subunit SctT Morganella morganii S4
6 group_462 LHKJJB_04080 85855 86640 1 fliR flagellar biosynthetic protein FliR Morganella morganii S3
7 group_314 LHKJJB_10900 159885 160646 -1 sctT type III secretion system export apparatus subunit SctT Morganella morganii S3
8 group_462 HKOGLL_02965 200942 201727 -1 fliR flagellar biosynthetic protein FliR Morganella morganii S5
9 group_314 HKOGLL_13960 93186 93947 -1 sctT type III secretion system export apparatus subunit SctT Morganella morganii S5
10 group_462 F4V73_RS06660 1384229 1385011 1 fliR flagellar biosynthetic protein FliR Morganella psychrotolerans
11 group_314 F4V73_RS08345 1728193 1728978 1 sctT type III secretion system export apparatus subunit SctT Morganella psychrotolerans
12 group_314 F4V73_RS10665 261974 262735 1 sctT type III secretion system export apparatus subunit SctT Morganella psychrotolerans
13 group_462 PMI_RS08020 1753555 1754337 1 fliR flagellar biosynthetic protein FliR Proteus mirabilis HI4320
14 group_314 PMI_RS13235 2938842 2939615 -1 sctT type III secretion system export apparatus subunit SctT Proteus mirabilis HI4320