Homologs in group_314

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09300 FBDBKF_09300 100.0 Morganella morganii S1 sctT type III secretion system export apparatus subunit SctT
EHELCC_10110 EHELCC_10110 100.0 Morganella morganii S2 sctT type III secretion system export apparatus subunit SctT
NLDBIP_10455 NLDBIP_10455 100.0 Morganella morganii S4 sctT type III secretion system export apparatus subunit SctT
LHKJJB_10900 LHKJJB_10900 100.0 Morganella morganii S3 sctT type III secretion system export apparatus subunit SctT
F4V73_RS08345 F4V73_RS08345 27.0 Morganella psychrotolerans sctT type III secretion system export apparatus subunit SctT
F4V73_RS10665 F4V73_RS10665 70.0 Morganella psychrotolerans sctT type III secretion system export apparatus subunit SctT
PMI_RS13235 PMI_RS13235 39.0 Proteus mirabilis HI4320 sctT type III secretion system export apparatus subunit SctT

Distribution of the homologs in the orthogroup group_314

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_314

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A1M7 4.07e-35 129 40 5 206 3 spaR Surface presentation of antigens protein SpaR Shigella sonnei
P0A1M6 4.43e-35 129 40 5 206 1 spaR Surface presentation of antigens protein SpaR Shigella flexneri
P40701 8.13e-24 99 33 3 238 1 spaR Surface presentation of antigens protein SpaR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P69985 1.93e-12 68 25 3 208 3 yscT Yop proteins translocation protein T Yersinia pseudotuberculosis serotype I (strain IP32953)
P69984 1.93e-12 68 25 3 208 3 yscT Yop proteins translocation protein T Yersinia pestis
P55722 1.61e-11 66 28 5 179 3 NGR_a00590 Probable translocation protein y4yN Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P96068 1.54e-10 63 27 3 162 3 ssaT Secretion system apparatus protein SsaT Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P35537 6.24e-08 55 24 2 221 3 fliR Flagellar biosynthetic protein FliR Bacillus subtilis (strain 168)
P34202 2.35e-07 53 26 3 203 3 fliR Flagellar biosynthetic protein FliR Pectobacterium carotovorum subsp. carotovorum
Q89AZ0 2.9e-07 53 25 8 226 3 fliR Flagellar biosynthetic protein FliR Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P54702 5.28e-06 50 26 5 157 1 fliR Flagellar biosynthetic protein FliR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33135 2.04e-05 48 26 4 155 3 fliR Flagellar biosynthetic protein FliR Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_13960
Feature type CDS
Gene sctT
Product type III secretion system export apparatus subunit SctT
Location 93186 - 93947 (strand: -1)
Length 762 (nucleotides) / 253 (amino acids)

Contig

Accession ZDB_692
Length 124746 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_314
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF01311 Bacterial export proteins, family 1

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4791 Intracellular trafficking, secretion, and vesicular transport (U) U Type III secretory pathway, EscT/YscT component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K22509 type III secretion system export apparatus protein - -

Protein Sequence

MSLFSWLHDLFQNALLSSVRLFAAFSFLPFLNDKFILSRTTRGIIIFLMAQCLSGNGDYPAAEFSVVNILSEIITGMVMGLVYSTPFFIFSAFGEYIDNQRGANISDTADPTTGTDASPFSTFMNLFSVSFFLLNDGFVLLMTSVQDSFRLLPPGTLLTEIHYAAVFDWLTNSLSLSLLFCMPVLIILFISEVSLGILALYNSQLNPFSLSLSIKSIIAFLLALLLFRSTTMTDVTVLFDTSPLTHFLRGNDG

Flanking regions ( +/- flanking 50bp)

GCGAAATGTTCTCACTGGCGCTCAGCGCAACAGCGGCAGGTTAGTTCCCGGTGTCGTTATTCTCCTGGCTTCATGACCTGTTTCAGAACGCGCTGTTAAGTAGTGTGCGGTTATTTGCGGCGTTCTCTTTTTTGCCGTTTCTGAATGATAAATTTATCCTCAGCCGGACCACGCGGGGCATTATTATTTTTCTCATGGCGCAGTGTCTCAGCGGAAATGGAGACTATCCGGCGGCAGAGTTCTCAGTGGTCAATATACTGAGTGAGATCATTACCGGCATGGTAATGGGGTTGGTTTACAGCACGCCGTTTTTTATTTTTTCCGCCTTCGGTGAATATATTGATAATCAGCGGGGGGCGAATATCAGTGATACCGCTGATCCGACAACAGGGACCGATGCATCACCGTTTTCCACCTTTATGAATCTGTTTTCTGTCTCGTTTTTTTTGCTCAATGATGGTTTTGTGTTACTGATGACATCCGTTCAGGATAGTTTCCGGTTGTTACCGCCGGGTACATTGCTGACGGAAATCCATTATGCGGCGGTATTTGACTGGCTGACAAACAGCCTGTCACTCTCTTTGCTGTTTTGTATGCCGGTACTGATTATCTTATTTATTTCTGAAGTCAGCCTGGGCATTCTGGCGCTGTACAATTCACAACTGAATCCGTTTTCCTTATCACTTTCAATAAAAAGTATTATTGCCTTTTTGCTGGCGCTGCTGCTGTTTCGCAGCACAACAATGACGGATGTGACAGTGCTGTTTGATACTTCCCCTCTGACTCACTTTTTGAGGGGGAACGATGGCTGAAAAAACCGAAAAACCCACCAGTAAGAAACTAAAGGACGAATCGAAAAAAG