PF00939


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00939, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00939
Description Sodium:sulfate symporter transmembrane region

Occurence in the database

PF00939 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2344 FBDBKF_18925 1383 2855 1 citT Di- and tricarboxylate antiporter Morganella morganii S1
1 group_2344 EHELCC_18670 1383 2855 1 citT Di- and tricarboxylate antiporter Morganella morganii S2
2 group_2344 NLDBIP_18635 22658 24130 -1 citT Di- and tricarboxylate antiporter Morganella morganii S4
3 group_2344 LHKJJB_18540 1383 2855 1 citT Di- and tricarboxylate antiporter Morganella morganii S3
4 group_2344 HKOGLL_18275 1383 2855 1 citT Di- and tricarboxylate antiporter Morganella morganii S5
5 group_2344 F4V73_RS13830 400244 401716 1 DASS family sodium-coupled anion symporter Morganella psychrotolerans
6 group_1869 PMI_RS01070 264470 265852 1 DASS family sodium-coupled anion symporter Proteus mirabilis HI4320
7 group_2344 PMI_RS10870 2395514 2396986 1 anion permease Proteus mirabilis HI4320