PF00816


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00816, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00816
Description H-NS histone C-terminal domain

Occurence in the database

PF00816 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_270 FBDBKF_05345 78239 78649 1 hns DNA-binding protein H-NS Morganella morganii S1
1 group_270 EHELCC_12245 102845 103255 -1 hns DNA-binding protein H-NS Morganella morganii S2
2 group_270 NLDBIP_12585 102800 103210 -1 hns DNA-binding protein H-NS Morganella morganii S4
3 group_270 LHKJJB_12445 102845 103255 -1 hns DNA-binding protein H-NS Morganella morganii S3
4 group_270 HKOGLL_11060 102845 103255 -1 hns DNA-binding protein H-NS Morganella morganii S5
5 group_270 F4V73_RS05800 1235141 1235551 1 hns histone-like nucleoid-structuring protein H-NS Morganella psychrotolerans
6 group_270 PMI_RS07205 1578689 1579093 1 hns histone-like nucleoid-structuring protein H-NS Proteus mirabilis HI4320
7 group_270 PMI_RS18630 20507 21022 1 H-NS family nucleoid-associated regulatory protein Proteus mirabilis HI4320