PF00813
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00813, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 15 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF00813 |
Description |
FliP family |
Occurence in the database
PF00813 is associated with 15 different proteins (see tab "Protein list" and "Profile") |
The 15 proteins are classified into 2 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_460 |
FBDBKF_00640 |
106303 |
107043 |
1 |
fliP |
flagellar type III secretion system pore protein FliP |
Morganella morganii S1 |
1 |
group_316 |
FBDBKF_09310 |
93768 |
94427 |
-1 |
escR |
EscR/YscR/HrcR family type III secretion system export apparatus protein |
Morganella morganii S1 |
2 |
group_460 |
EHELCC_00905 |
201825 |
202565 |
-1 |
fliP |
flagellar type III secretion system pore protein FliP |
Morganella morganii S2 |
3 |
group_316 |
EHELCC_10100 |
51677 |
52336 |
1 |
escR |
EscR/YscR/HrcR family type III secretion system export apparatus protein |
Morganella morganii S2 |
4 |
group_460 |
NLDBIP_02555 |
477571 |
478311 |
1 |
fliP |
flagellar type III secretion system pore protein FliP |
Morganella morganii S4 |
5 |
group_316 |
NLDBIP_10445 |
29948 |
30607 |
1 |
escR |
EscR/YscR/HrcR family type III secretion system export apparatus protein |
Morganella morganii S4 |
6 |
group_460 |
LHKJJB_04070 |
84812 |
85552 |
1 |
fliP |
flagellar type III secretion system pore protein FliP |
Morganella morganii S3 |
7 |
group_316 |
LHKJJB_10910 |
160921 |
161580 |
-1 |
escR |
EscR/YscR/HrcR family type III secretion system export apparatus protein |
Morganella morganii S3 |
8 |
group_460 |
HKOGLL_02975 |
202030 |
202770 |
-1 |
fliP |
flagellar type III secretion system pore protein FliP |
Morganella morganii S5 |
9 |
group_316 |
HKOGLL_13970 |
94222 |
94881 |
-1 |
escR |
EscR/YscR/HrcR family type III secretion system export apparatus protein |
Morganella morganii S5 |
10 |
group_460 |
F4V73_RS06650 |
1383204 |
1383947 |
1 |
fliP |
flagellar type III secretion system pore protein FliP |
Morganella psychrotolerans |
11 |
group_316 |
F4V73_RS08335 |
1727295 |
1727942 |
1 |
sctR |
type III secretion system export apparatus subunit SctR |
Morganella psychrotolerans |
12 |
group_316 |
F4V73_RS10655 |
261042 |
261701 |
1 |
|
EscR/YscR/HrcR family type III secretion system export apparatus protein |
Morganella psychrotolerans |
13 |
group_460 |
PMI_RS08010 |
1752495 |
1753265 |
1 |
fliP |
flagellar type III secretion system pore protein FliP |
Proteus mirabilis HI4320 |
14 |
group_316 |
PMI_RS13245 |
2939875 |
2940534 |
-1 |
|
EscR/YscR/HrcR family type III secretion system export apparatus protein |
Proteus mirabilis HI4320 |