Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF00669
Protein list: lists the 22 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.
| Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
|---|---|---|---|---|---|---|---|---|
| 0 | group_22 | FBDBKF_00520 | 87351 | 88421 | -1 | Flagellin | Morganella morganii S1 | |
| 1 | group_22 | FBDBKF_00525 | 88652 | 89803 | -1 | flgL | Flagellin and related hook-associated protein FlgL | Morganella morganii S1 |
| 2 | group_540 | FBDBKF_00665 | 110168 | 111115 | -1 | flgL | flagellar hook-associated protein FlgL | Morganella morganii S1 |
| 3 | group_540 | EHELCC_00880 | 197753 | 198700 | 1 | flgL | flagellar hook-associated protein FlgL | Morganella morganii S2 |
| 4 | group_22 | EHELCC_01020 | 219065 | 220216 | 1 | flgL | Flagellin and related hook-associated protein FlgL | Morganella morganii S2 |
| 5 | group_22 | EHELCC_01025 | 220447 | 221517 | 1 | Flagellin | Morganella morganii S2 | |
| 6 | group_22 | NLDBIP_02435 | 458619 | 459689 | -1 | Flagellin | Morganella morganii S4 | |
| 7 | group_22 | NLDBIP_02440 | 459920 | 461071 | -1 | flgL | Flagellin and related hook-associated protein FlgL | Morganella morganii S4 |
| 8 | group_540 | NLDBIP_02580 | 481436 | 482383 | -1 | flgL | flagellar hook-associated protein FlgL | Morganella morganii S4 |
| 9 | group_22 | LHKJJB_03950 | 65860 | 66930 | -1 | Flagellin | Morganella morganii S3 | |
| 10 | group_22 | LHKJJB_03955 | 67161 | 68312 | -1 | flgL | Flagellin and related hook-associated protein FlgL | Morganella morganii S3 |
| 11 | group_540 | LHKJJB_04095 | 88677 | 89624 | -1 | flgL | flagellar hook-associated protein FlgL | Morganella morganii S3 |
| 12 | group_540 | HKOGLL_02950 | 197958 | 198905 | 1 | flgL | flagellar hook-associated protein FlgL | Morganella morganii S5 |
| 13 | group_22 | HKOGLL_03090 | 219270 | 220421 | 1 | flgL | Flagellin and related hook-associated protein FlgL | Morganella morganii S5 |
| 14 | group_22 | HKOGLL_03095 | 220652 | 221722 | 1 | Flagellin | Morganella morganii S5 | |
| 15 | group_22 | F4V73_RS06530 | 1363200 | 1364348 | -1 | FliC/FljB family flagellin | Morganella psychrotolerans | |
| 16 | group_22 | F4V73_RS06535 | 1364590 | 1365726 | -1 | FliC/FljB family flagellin | Morganella psychrotolerans | |
| 17 | group_22 | F4V73_RS06540 | 1365973 | 1367115 | -1 | FliC/FljB family flagellin | Morganella psychrotolerans | |
| 18 | group_540 | F4V73_RS06675 | 1387011 | 1387958 | -1 | flgL | flagellar hook-associated protein FlgL | Morganella psychrotolerans |
| 19 | group_22 | PMI_RS07910 | 1733606 | 1734709 | -1 | FliC/FljB family flagellin | Proteus mirabilis HI4320 | |
| 20 | group_22 | PMI_RS07915 | 1735019 | 1736110 | -1 | FliC/FljB family flagellin | Proteus mirabilis HI4320 | |
| 21 | group_540 | PMI_RS08025 | 1754650 | 1755594 | -1 | flgL | flagellar hook-associated protein FlgL | Proteus mirabilis HI4320 |
