Orthogroup:group_22


Homologs in group_22

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19 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08955 FBDBKF_08955 Morganella morganii S1 xerD Site-specific recombinase XerD
FBDBKF_09000 FBDBKF_09000 Morganella morganii S1 xerD Site-specific recombinase XerD
FBDBKF_09050 FBDBKF_09050 Morganella morganii S1 xerD Site-specific recombinase XerD
EHELCC_10360 EHELCC_10360 Morganella morganii S2 xerD Site-specific recombinase XerD
EHELCC_10410 EHELCC_10410 Morganella morganii S2 xerD Site-specific recombinase XerD
EHELCC_10455 EHELCC_10455 Morganella morganii S2 xerD Site-specific recombinase XerD
NLDBIP_10705 NLDBIP_10705 Morganella morganii S4 xerD Site-specific recombinase XerD
NLDBIP_10755 NLDBIP_10755 Morganella morganii S4 xerD Site-specific recombinase XerD
NLDBIP_10800 NLDBIP_10800 Morganella morganii S4 xerD Site-specific recombinase XerD
LHKJJB_10555 LHKJJB_10555 Morganella morganii S3 xerD Site-specific recombinase XerD
LHKJJB_10600 LHKJJB_10600 Morganella morganii S3 xerD Site-specific recombinase XerD
LHKJJB_10650 LHKJJB_10650 Morganella morganii S3 xerD Site-specific recombinase XerD
HKOGLL_13615 HKOGLL_13615 Morganella morganii S5 xerD Site-specific recombinase XerD
HKOGLL_13660 HKOGLL_13660 Morganella morganii S5 xerD Site-specific recombinase XerD
HKOGLL_13710 HKOGLL_13710 Morganella morganii S5 xerD Site-specific recombinase XerD
F4V73_RS10920 F4V73_RS10920 Morganella psychrotolerans - tyrosine-type DNA invertase
F4V73_RS10970 F4V73_RS10970 Morganella psychrotolerans - tyrosine-type DNA invertase
F4V73_RS11015 F4V73_RS11015 Morganella psychrotolerans - tyrosine-type recombinase/integrase
PMI_RS01270 PMI_RS01270 Proteus mirabilis HI4320 mrpI phase variation DNA invertase MrpI

Distribution of group_22 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_22 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_22

Orthogroup content: 19 members

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This page summarizes the annotation of all members of the orthologous group group_22.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 xerD 15
2 - 3
3 mrpI 1

Product

# Product Occurence
1 Site-specific recombinase XerD 15
2 tyrosine-type DNA invertase 2
3 tyrosine-type recombinase/integrase 1
4 phase variation DNA invertase MrpI 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4974 19 L Replication, recombination and repair (L) Site-specific recombinase XerD

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07357 13 type 1 fimbriae regulatory protein FimB - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00589 19 Phage integrase family

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG042620 7 phase variation DNA invertase MrpI VF1233 Adherence

Annotations of the 354 SwissProt hits

Annotation Number of occurrences
Integrase/recombinase 3
Probable integrase/recombinase protein MJ0367 1
Putative integrase/recombinase y4eF 1
Putative integrase/recombinase y4gC 1
Putative integrase/recombinase y4qK 1
Putative integrase/recombinase y4rA 1
Putative integrase/recombinase y4rB 1
Putative integrase/recombinase y4rC 1
Putative integrase/recombinase y4rE 1
Putative integrase/recombinase y4rF 1
Putative tyrosine recombinase CA_C2066 1
Putative tyrosine recombinase TTE1313 1
TnP I resolvase 1
Transposase A from transposon Tn554 3
Transposase B from transposon Tn554 3
Transposase from transposon Tn1545 2
Transposase from transposon Tn916 1
Type 1 fimbriae regulatory protein FimB 2
Type 1 fimbriae regulatory protein FimE 3
Tyrosine recombinase EUBREC_2677 1
Tyrosine recombinase THA_404 1
Tyrosine recombinase Tlet_1492 1
Tyrosine recombinase XerA 7
Tyrosine recombinase XerC 199
Tyrosine recombinase XerC 1 1
Tyrosine recombinase XerC 2 1
Tyrosine recombinase XerD 68
Tyrosine recombinase XerH 2
Tyrosine recombinase XerS 41
Tyrosine recombinase slr0733 1
Virulence plasmid integrase pGP8-D 2

Protein length

Min length 183
Max length 188
Mean length (sd) 185.5 (1.8)
Median length 186.0

Protein length distribution