Orthogroup:group_540



Homologs in group_540

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01255 FBDBKF_01255 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
EHELCC_00290 EHELCC_00290 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_03170 NLDBIP_03170 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_04685 LHKJJB_04685 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_02360 HKOGLL_02360 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
F4V73_RS07295 F4V73_RS07295 Morganella psychrotolerans - TetR/AcrR family transcriptional regulator
PMI_RS06060 PMI_RS06060 Proteus mirabilis HI4320 - TetR/AcrR family transcriptional regulator

Distribution of group_540 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_540 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_540

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_540.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 acrR 5
2 - 2

Product

# Product Occurence
1 DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA 5
2 TetR/AcrR family transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1309 7 K Transcription (K) DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00440 7 Bacterial regulatory proteins, tetR family

Annotations of the 73 SwissProt hits

Annotation Number of occurrences
Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR 10
Fatty acid metabolism regulator protein 1
HTH-type transcriptional regulator BetI 35
HTH-type transcriptional regulator MtrR 1
HTH-type transcriptional regulator QacR 3
HTH-type transcriptional regulator UidR 4
HTH-type transcriptional repressor BepR 1
HTH-type transcriptional repressor Bm3R1 1
HTH-type transcriptional repressor ComR 1
HTH-type transcriptional repressor DhaR 1
HTH-type transcriptional repressor FatR 1
HTH-type transcriptional repressor KstR2 4
HTH-type transcriptional repressor NemR 2
Transcriptional regulator AcuR 1
Transcriptional repressor Mce3R 1
Transposon Tn10 TetC protein 1
Uncharacterized HTH-type transcriptional regulator YdeS 1
Uncharacterized HTH-type transcriptional regulator YerO 1
Uncharacterized HTH-type transcriptional regulator YfiR 1
Uncharacterized HTH-type transcriptional regulator YuxN 1
Uncharacterized HTH-type transcriptional regulator YvdT 1

Protein length

Min length 197
Max length 198
Mean length (sd) 197.1 (0.4)
Median length 197.0

Protein length distribution