PF00579


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00579, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00579
Description tRNA synthetases class I (W and Y)

Occurence in the database

PF00579 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_543 FBDBKF_01270 243429 244442 -1 trpS tryptophan--tRNA ligase Morganella morganii S1
1 group_1014 FBDBKF_05665 140215 141489 -1 tyrS tyrosine--tRNA ligase Morganella morganii S1
2 group_1600 FBDBKF_10440 43593 44621 1 trpS tryptophan--tRNA ligase Morganella morganii S1
3 group_543 EHELCC_00275 64426 65439 1 trpS tryptophan--tRNA ligase Morganella morganii S2
4 group_1014 EHELCC_11925 40005 41279 1 tyrS tyrosine--tRNA ligase Morganella morganii S2
5 group_1600 EHELCC_14775 43583 44611 1 trpS tryptophan--tRNA ligase Morganella morganii S2
6 group_543 NLDBIP_03185 614697 615710 -1 trpS tryptophan--tRNA ligase Morganella morganii S4
7 group_1014 NLDBIP_12265 39960 41234 1 tyrS tyrosine--tRNA ligase Morganella morganii S4
8 group_1600 NLDBIP_14605 43583 44611 1 trpS tryptophan--tRNA ligase Morganella morganii S4
9 group_543 LHKJJB_04700 221938 222951 -1 trpS tryptophan--tRNA ligase Morganella morganii S3
10 group_1014 LHKJJB_12125 40005 41279 1 tyrS tyrosine--tRNA ligase Morganella morganii S3
11 group_1600 LHKJJB_14740 97115 98143 -1 trpS tryptophan--tRNA ligase Morganella morganii S3
12 group_543 HKOGLL_02345 64631 65644 1 trpS tryptophan--tRNA ligase Morganella morganii S5
13 group_1014 HKOGLL_10740 40005 41279 1 tyrS tyrosine--tRNA ligase Morganella morganii S5
14 group_1600 HKOGLL_13360 97115 98143 -1 trpS tryptophan--tRNA ligase Morganella morganii S5
15 group_1014 F4V73_RS03640 773471 774745 1 tyrS tyrosine--tRNA ligase Morganella psychrotolerans
16 group_543 F4V73_RS07310 1524429 1525442 -1 trpS tryptophan--tRNA ligase Morganella psychrotolerans
17 group_1600 F4V73_RS14135 40327 41358 1 trpS tryptophan--tRNA ligase Morganella psychrotolerans
18 group_1014 PMI_RS06695 1464156 1465430 -1 tyrS tyrosine--tRNA ligase Proteus mirabilis HI4320
19 group_543 PMI_RS08460 1842876 1843895 -1 trpS tryptophan--tRNA ligase Proteus mirabilis HI4320
20 group_1600 PMI_RS15000 3328399 3329427 1 trpS tryptophan--tRNA ligase Proteus mirabilis HI4320