Orthogroup:group_1647


Homologs in group_1647

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10940 FBDBKF_10940 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_05285 EHELCC_05285 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_05605 NLDBIP_05605 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_02485 LHKJJB_02485 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_15865 HKOGLL_15865 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS08355 F4V73_RS08355 Morganella psychrotolerans - AraC family transcriptional regulator
PMI_RS09670 PMI_RS09670 Proteus mirabilis HI4320 - AraC family transcriptional regulator

Distribution of group_1647 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_1647 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1647

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_1647.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 araC 5
2 - 2

Product

# Product Occurence
1 AraC-type DNA-binding domain and AraC-containing proteins 5
2 AraC family transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2207 7 K Transcription (K) AraC-type DNA-binding domain and AraC-containing proteins

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K20968 7 AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA Biofilm formation - Pseudomonas aeruginosa -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF12833 7 Helix-turn-helix domain
PF22200 7 ExsA N-terminal regulatory domain

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG038332 1 Type III secretion system transcriptional regulator VF0479 Effector delivery system

Annotations of the 152 SwissProt hits

Annotation Number of occurrences
Anthranilate 1,2-dioxygenase regulatory protein 1
Arabinose operon regulatory protein 3
HTH-type transcriptional activator AarP 1
HTH-type transcriptional activator RhaR 29
HTH-type transcriptional activator RhaS 54
HTH-type transcriptional regulator AlkR 1
HTH-type transcriptional regulator ArgR 1
HTH-type transcriptional regulator CdhR 1
HTH-type transcriptional regulator ChbR 1
HTH-type transcriptional regulator ExsA 1
HTH-type transcriptional regulator GadX 2
HTH-type transcriptional regulator GbdR 2
HTH-type transcriptional regulator MtrA 1
HTH-type transcriptional regulator RipA 1
HTH-type transcriptional regulator YesS 1
Histidine kinase P4 1
Lactose operon transcription activator 1
Melibiose operon regulatory protein 2
Msm operon regulatory protein 1
Probable transcription factor PqrA 1
Probable transcriptional regulator LumQ 1
RCS-specific HTH-type transcriptional activator RclR 1
Regulatory protein PchR 1
Regulatory protein PocR 1
Regulatory protein SoxS 4
Right origin-binding protein 3
TCP pilus virulence regulatory protein 2
Thermoregulatory protein LcrF 1
Transcriptional activator AggR 1
Transcriptional activator NphR 1
Transcriptional activator PerA 1
Transcriptional activator RamA 1
Transcriptional regulator RamA 2
Transcriptional regulator Rob 1
Transposon Tn10 TetD protein 1
Uncharacterized HTH-type transcriptional regulator 1
Uncharacterized HTH-type transcriptional regulator HI_1052 1
Uncharacterized HTH-type transcriptional regulator MW0077 1
Uncharacterized HTH-type transcriptional regulator SA0097 1
Uncharacterized HTH-type transcriptional regulator SACOL0084 1
Uncharacterized HTH-type transcriptional regulator SAR0107 1
Uncharacterized HTH-type transcriptional regulator SAS0078 1
Uncharacterized HTH-type transcriptional regulator SAV0101 1
Uncharacterized HTH-type transcriptional regulator YbcM 1
Uncharacterized HTH-type transcriptional regulator YbfI 1
Uncharacterized HTH-type transcriptional regulator YdeE 1
Uncharacterized HTH-type transcriptional regulator YdiP 1
Uncharacterized HTH-type transcriptional regulator YqhC 1
Urease operon transcriptional activator 2
Virulence regulon transcriptional activator VirF 5
XylDLEGF operon transcriptional activator 2 1
Xylose operon regulatory protein 3

Protein length

Min length 274
Max length 278
Mean length (sd) 274.6 (1.5)
Median length 274.0

Protein length distribution