PF00550


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00550, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 22 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00550
Description Phosphopantetheine attachment site

Occurence in the database

PF00550 is associated with 22 different proteins (see tab "Protein list" and "Profile")
The 22 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_383 FBDBKF_14710 40382 40618 -1 acpP acyl carrier protein Morganella morganii S1
1 group_3015 FBDBKF_17880 1296 7400 1 tam Trans-aconitate methyltransferase Morganella morganii S1
2 group_3016 FBDBKF_17885 7413 16628 1 pksD Acyl transferase domain in polyketide synthase (PKS) enzymes Morganella morganii S1
3 group_3016 EHELCC_06450 19748 28963 -1 pksD Acyl transferase domain in polyketide synthase (PKS) enzymes Morganella morganii S2
4 group_3015 EHELCC_06455 28976 35080 -1 tam Trans-aconitate methyltransferase Morganella morganii S2
5 group_383 EHELCC_15515 70458 70694 -1 acpP acyl carrier protein Morganella morganii S2
6 group_3016 NLDBIP_06770 19621 28836 -1 pksD Acyl transferase domain in polyketide synthase (PKS) enzymes Morganella morganii S4
7 group_3015 NLDBIP_06775 28849 34953 -1 tam Trans-aconitate methyltransferase Morganella morganii S4
8 group_383 NLDBIP_16045 70458 70694 -1 acpP acyl carrier protein Morganella morganii S4
9 group_383 LHKJJB_15795 45992 46228 1 acpP acyl carrier protein Morganella morganii S3
10 group_3015 LHKJJB_18885 1304 7408 1 tam Trans-aconitate methyltransferase Morganella morganii S3
11 group_3016 LHKJJB_18890 7421 16636 1 pksD Acyl transferase domain in polyketide synthase (PKS) enzymes Morganella morganii S3
12 group_3015 HKOGLL_04615 234688 240792 1 tam Trans-aconitate methyltransferase Morganella morganii S5
13 group_3016 HKOGLL_04620 240805 250020 1 pksD Acyl transferase domain in polyketide synthase (PKS) enzymes Morganella morganii S5
14 group_383 HKOGLL_14915 45204 45440 1 acpP acyl carrier protein Morganella morganii S5
15 group_383 F4V73_RS07505 1569101 1569340 -1 acpP acyl carrier protein Morganella psychrotolerans
16 group_3853 F4V73_RS11950 545786 546049 1 phosphopantetheine-binding protein Morganella psychrotolerans
17 group_383 F4V73_RS11955 546062 546310 1 acyl carrier protein Morganella psychrotolerans
18 group_383 PMI_RS04230 952065 952301 1 acpP acyl carrier protein Proteus mirabilis HI4320
19 group_3015 PMI_RS12835 2834947 2841051 1 non-ribosomal peptide synthetase Proteus mirabilis HI4320
20 group_3016 PMI_RS12840 2841064 2850279 1 type I polyketide synthase Proteus mirabilis HI4320
21 group_3853 PMI_RS14385 3192192 3192512 -1 phosphopantetheine-binding protein Proteus mirabilis HI4320