Orthogroup:group_498


Homologs in group_498

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_00925 FBDBKF_00925 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_00620 EHELCC_00620 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_02840 NLDBIP_02840 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_04355 LHKJJB_04355 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_02690 HKOGLL_02690 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS06920 F4V73_RS06920 Morganella psychrotolerans - AraC family transcriptional regulator
PMI_RS05015 PMI_RS05015 Proteus mirabilis HI4320 - AraC family transcriptional regulator

Distribution of group_498 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_498 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_498

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_498.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 araC 5
2 - 2

Product

# Product Occurence
1 AraC-type DNA-binding domain and AraC-containing proteins 5
2 AraC family transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2207 1 K Transcription (K) AraC-type DNA-binding domain and AraC-containing proteins
COG4977 6 K Transcription (K) Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain

Pfam domain Annotation(s)

Domain ID Occurences Description
PF12833 7 Helix-turn-helix domain

Annotations of the 219 SwissProt hits

Annotation Number of occurrences
Anthranilate 1,2-dioxygenase regulatory protein 1
Arabinose operon regulatory protein 5
Bifunctional transcriptional activator/DNA repair enzyme AdaA 1
CFA/I fimbrial subunit D 1
HTH-type transcriptional activator AarP 1
HTH-type transcriptional activator CsvR 1
HTH-type transcriptional activator RhaR 40
HTH-type transcriptional activator RhaS 57
HTH-type transcriptional regulator AdiY 1
HTH-type transcriptional regulator AlkR 1
HTH-type transcriptional regulator AppY 1
HTH-type transcriptional regulator ArgR 1
HTH-type transcriptional regulator CdhR 1
HTH-type transcriptional regulator ChbR 1
HTH-type transcriptional regulator ExsA 1
HTH-type transcriptional regulator GadW 1
HTH-type transcriptional regulator GadX 5
HTH-type transcriptional regulator GbdR 2
HTH-type transcriptional regulator GlxA 1
HTH-type transcriptional regulator MtrA 1
HTH-type transcriptional regulator RipA 3
HTH-type transcriptional regulator VirS 2
HTH-type transcriptional regulator YdeO 4
HTH-type transcriptional regulator YesS 1
Histidine kinase P4 1
Lactose operon transcription activator 1
MmsAB operon regulatory protein 1
Msm operon regulatory protein 1
Multiple antibiotic resistance protein MarA 6
Probable transcription factor PqrA 1
Probable transcriptional regulator LumQ 1
Putative AraC-like transcription regulator 2
Putative HTH-type transcriptional regulator YkgA 1
RCS-specific HTH-type transcriptional activator RclR 1
Raffinose operon transcriptional regulatory protein RafR 1
Regulatory protein PchR 1
Regulatory protein PocR 1
Regulatory protein SoxS 4
Right origin-binding protein 3
Thermoregulatory protein LcrF 1
Transcriptional activator AggR 1
Transcriptional activator FeaR 1
Transcriptional activator NphR 1
Transcriptional activator PerA 1
Transcriptional activator RamA 2
Transcriptional regulator HilD 2
Transcriptional regulator RamA 2
Transcriptional regulator Rob 1
Transcriptional regulator SirC 2
Transcriptional regulator sirC 1
Transcriptional regulatory protein HptR 9
Transposon Tn10 TetD protein 1
Uncharacterized HTH-type transcriptional regulator 1
Uncharacterized HTH-type transcriptional regulator HI_1052 1
Uncharacterized HTH-type transcriptional regulator MT1440 1
Uncharacterized HTH-type transcriptional regulator MW0077 1
Uncharacterized HTH-type transcriptional regulator Mb1430 1
Uncharacterized HTH-type transcriptional regulator Rv1395 1
Uncharacterized HTH-type transcriptional regulator SA0097 1
Uncharacterized HTH-type transcriptional regulator SACOL0084 1
Uncharacterized HTH-type transcriptional regulator SAR0107 1
Uncharacterized HTH-type transcriptional regulator SAS0078 1
Uncharacterized HTH-type transcriptional regulator SAV0101 1
Uncharacterized HTH-type transcriptional regulator YbcM 1
Uncharacterized HTH-type transcriptional regulator YbfP 1
Uncharacterized HTH-type transcriptional regulator YdeC 1
Uncharacterized HTH-type transcriptional regulator YdiP 1
Uncharacterized HTH-type transcriptional regulator YfiF 1
Uncharacterized HTH-type transcriptional regulator YidL 1
Uncharacterized HTH-type transcriptional regulator YijO 1
Uncharacterized HTH-type transcriptional regulator YobQ 1
Uncharacterized HTH-type transcriptional regulator YpdC 1
Uncharacterized HTH-type transcriptional regulator YqhC 1
Uncharacterized response regulatory protein SERP2406 1
Uncharacterized response regulatory protein SE_0165 1
Urease operon transcriptional activator 2
Virulence regulon transcriptional activator VirF 5
Xylose operon regulatory protein 4

Protein length

Min length 228
Max length 244
Mean length (sd) 238.1 (4.8)
Median length 239.0

Protein length distribution