PF00499


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00499, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00499
Description NADH-ubiquinone/plastoquinone oxidoreductase chain 6

Occurence in the database

PF00499 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1891 FBDBKF_14125 19857 20393 -1 nuoJ NADH-quinone oxidoreductase subunit J Morganella morganii S1
1 group_1891 EHELCC_08155 96592 97128 1 nuoJ NADH-quinone oxidoreductase subunit J Morganella morganii S2
2 group_1891 NLDBIP_08480 96592 97128 1 nuoJ NADH-quinone oxidoreductase subunit J Morganella morganii S4
3 group_1891 LHKJJB_05785 160031 160567 -1 nuoJ NADH-quinone oxidoreductase subunit J Morganella morganii S3
4 group_1891 HKOGLL_05130 81183 81719 1 nuoJ NADH-quinone oxidoreductase subunit J Morganella morganii S5
5 group_1891 F4V73_RS02810 593971 594507 1 nuoJ NADH-quinone oxidoreductase subunit J Morganella psychrotolerans
6 group_1891 PMI_RS08605 1878849 1879382 -1 nuoJ NADH-quinone oxidoreductase subunit J Proteus mirabilis HI4320