Orthogroup:group_1929


Homologs in group_1929

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14350 FBDBKF_14350 Morganella morganii S1 smrB endonuclease SmrB
EHELCC_07930 EHELCC_07930 Morganella morganii S2 smrB endonuclease SmrB
NLDBIP_08255 NLDBIP_08255 Morganella morganii S4 smrB endonuclease SmrB
LHKJJB_06010 LHKJJB_06010 Morganella morganii S3 smrB endonuclease SmrB
HKOGLL_04905 HKOGLL_04905 Morganella morganii S5 smrB endonuclease SmrB
F4V73_RS02555 F4V73_RS02555 Morganella psychrotolerans smrB endonuclease SmrB
PMI_RS08850 PMI_RS08850 Proteus mirabilis HI4320 smrB endonuclease SmrB

Distribution of group_1929 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1929 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1929

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1929.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 smrB 7

Product

# Product Occurence
1 endonuclease SmrB 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2840 7 L Replication, recombination and repair (L) DNA-nicking endonuclease, Smr domain

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01713 7 Smr domain

Annotations of the 92 SwissProt hits

Annotation Number of occurrences
Endonuclease MutS2 5
Probable DNA endonuclease SmrA 1
UPF0115 protein AHA_2357 1
UPF0115 protein BU098 1
UPF0115 protein BUAP5A_096 1
UPF0115 protein BUAPTUC7_097 1
UPF0115 protein BUsg_091 1
UPF0115 protein CKO_00454 1
UPF0115 protein ECA3071 1
UPF0115 protein ETA_11520 1
UPF0115 protein Ent638_2879 1
UPF0115 protein HD_1679 1
UPF0115 protein HI_1202 1
UPF0115 protein KPK_1418 1
UPF0115 protein KPN78578_26770 1
UPF0115 protein PBPRA0966 1
UPF0115 protein PC1_2813 1
UPF0115 protein PM0391 1
UPF0115 protein PMI1805 1
UPF0115 protein SO_3081 1
UPF0115 protein Sbal195_2848 1
UPF0115 protein Sbal223_1605 1
UPF0115 protein Sbal_2754 1
UPF0115 protein Shew185_2771 1
UPF0115 protein Shewana3_1467 1
UPF0115 protein Shewmr4_1414 1
UPF0115 protein Spro_3376 1
UPF0115 protein Sputcn32_2453 1
UPF0115 protein Sputw3181_1555 1
UPF0115 protein Tola_2181 1
UPF0115 protein VC0395_A1701/VC395_2233 1
UPF0115 protein VCM66_2042 1
UPF0115 protein VC_2119 1
UPF0115 protein VFMJ11_1940 1
UPF0115 protein VF_1807 1
UPF0115 protein VIBHAR_03116 1
UPF0115 protein VP2204 1
UPF0115 protein VSAL_I2166 1
UPF0115 protein VV1_1979 1
UPF0115 protein VV2436 1
UPF0115 protein YE1279 1
UPF0115 protein YPO2749/y1583/YP_2414 1
UPF0115 protein YfcN 41
UPF0115 protein YpAngola_A0379 1
UPF0115 protein YpsIP31758_1403 1
UPF0115 protein bbp_092 1
UPF0115 protein plu3198 1
Uncharacterized protein TP_0674 1

Protein length

Min length 180
Max length 181
Mean length (sd) 180.9 (0.4)
Median length 181.0

Protein length distribution