Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00465, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 31 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_253 | FBDBKF_03575 | 119008 | 120111 | 1 | gldA | Glycerol dehydrogenase or related enzyme, iron-containing ADH family | Morganella morganii S1 |
1 | group_968 | FBDBKF_05335 | 74127 | 76787 | 1 | adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | Morganella morganii S1 |
2 | group_285 | FBDBKF_06405 | 115863 | 117020 | 1 | yqhD | alcohol dehydrogenase | Morganella morganii S1 |
3 | group_186 | FBDBKF_07580 | 26911 | 28113 | 1 | eutG | Alcohol dehydrogenase, class IV | Morganella morganii S1 |
4 | group_253 | EHELCC_06960 | 126992 | 128095 | -1 | gldA | Glycerol dehydrogenase or related enzyme, iron-containing ADH family | Morganella morganii S2 |
5 | group_285 | EHELCC_09450 | 116435 | 117592 | 1 | yqhD | alcohol dehydrogenase | Morganella morganii S2 |
6 | group_968 | EHELCC_12255 | 104707 | 107367 | -1 | adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | Morganella morganii S2 |
7 | group_186 | EHELCC_13410 | 1105 | 2307 | 1 | eutG | Alcohol dehydrogenase, class IV | Morganella morganii S2 |
8 | group_253 | NLDBIP_07285 | 126865 | 127968 | -1 | gldA | Glycerol dehydrogenase or related enzyme, iron-containing ADH family | Morganella morganii S4 |
9 | group_285 | NLDBIP_09830 | 116435 | 117592 | 1 | yqhD | alcohol dehydrogenase | Morganella morganii S4 |
10 | group_968 | NLDBIP_12595 | 104662 | 107322 | -1 | adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | Morganella morganii S4 |
11 | group_186 | NLDBIP_13855 | 21980 | 23182 | 1 | eutG | Alcohol dehydrogenase, class IV | Morganella morganii S4 |
12 | group_253 | LHKJJB_06820 | 90611 | 91714 | -1 | gldA | Glycerol dehydrogenase or related enzyme, iron-containing ADH family | Morganella morganii S3 |
13 | group_285 | LHKJJB_07925 | 99646 | 100803 | -1 | yqhD | alcohol dehydrogenase | Morganella morganii S3 |
14 | group_186 | LHKJJB_08995 | 136567 | 137769 | -1 | eutG | Alcohol dehydrogenase, class IV | Morganella morganii S3 |
15 | group_968 | LHKJJB_12455 | 104707 | 107367 | -1 | adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | Morganella morganii S3 |
16 | group_253 | HKOGLL_04110 | 141673 | 142776 | 1 | gldA | Glycerol dehydrogenase or related enzyme, iron-containing ADH family | Morganella morganii S5 |
17 | group_285 | HKOGLL_07475 | 99646 | 100803 | -1 | yqhD | alcohol dehydrogenase | Morganella morganii S5 |
18 | group_186 | HKOGLL_08545 | 136567 | 137769 | -1 | eutG | Alcohol dehydrogenase, class IV | Morganella morganii S5 |
19 | group_968 | HKOGLL_11070 | 104707 | 107367 | -1 | adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | Morganella morganii S5 |
20 | group_186 | F4V73_RS04865 | 1034168 | 1035331 | -1 | dhaT | 1,3-propanediol dehydrogenase | Morganella psychrotolerans |
21 | group_285 | F4V73_RS07320 | 1527766 | 1528983 | -1 | iron-containing alcohol dehydrogenase | Morganella psychrotolerans | |
22 | group_253 | F4V73_RS11320 | 405825 | 406928 | -1 | glycerol dehydrogenase | Morganella psychrotolerans | |
23 | group_186 | F4V73_RS13540 | 342727 | 343929 | -1 | iron-containing alcohol dehydrogenase | Morganella psychrotolerans | |
24 | group_285 | F4V73_RS15520 | 96960 | 98117 | -1 | yqhD | alcohol dehydrogenase | Morganella psychrotolerans |
25 | group_285 | PMI_RS00120 | 45473 | 46630 | -1 | iron-containing alcohol dehydrogenase | Proteus mirabilis HI4320 | |
26 | group_186 | PMI_RS03235 | 715743 | 716894 | 1 | yiaY | L-threonine dehydrogenase | Proteus mirabilis HI4320 |
27 | group_968 | PMI_RS07195 | 1573743 | 1576406 | 1 | adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | Proteus mirabilis HI4320 |
28 | group_186 | PMI_RS13390 | 2968776 | 2969924 | -1 | 1-propanol dehydrogenase PduQ | Proteus mirabilis HI4320 | |
29 | group_253 | PMI_RS13635 | 3030118 | 3031221 | -1 | glycerol dehydrogenase | Proteus mirabilis HI4320 | |
30 | group_253 | PMI_RS17885 | 3929757 | 3930860 | -1 | glycerol dehydrogenase | Proteus mirabilis HI4320 |