PF00437


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00437, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00437
Description Type II/IV secretion system protein

Occurence in the database

PF00437 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_258 FBDBKF_04260 39869 41392 1 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB Morganella morganii S1
1 group_2000 FBDBKF_15045 19261 20283 1 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase Morganella morganii S1
2 group_258 EHELCC_05550 99326 100849 1 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB Morganella morganii S2
3 group_2000 EHELCC_11200 64623 65645 -1 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase Morganella morganii S2
4 group_258 NLDBIP_05870 140391 141914 1 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB Morganella morganii S4
5 group_2000 NLDBIP_11545 64623 65645 -1 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase Morganella morganii S4
6 group_258 LHKJJB_02750 117915 119438 1 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB Morganella morganii S3
7 group_2000 LHKJJB_11405 64623 65645 -1 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase Morganella morganii S3
8 group_258 HKOGLL_06225 39779 41302 1 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB Morganella morganii S5
9 group_2000 HKOGLL_10015 64623 65645 -1 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase Morganella morganii S5
10 group_258 F4V73_RS08705 1800939 1802510 1 ATPase, T2SS/T4P/T4SS family Morganella psychrotolerans
11 group_2000 F4V73_RS12405 65305 66336 -1 PilT/PilU family type 4a pilus ATPase Morganella psychrotolerans
12 group_2000 PMI_RS01610 386863 387882 1 PilT/PilU family type 4a pilus ATPase Proteus mirabilis HI4320
13 group_258 PMI_RS10105 2207887 2208990 1 ATPase, T2SS/T4P/T4SS family Proteus mirabilis HI4320
14 group_258 PMI_RS18590 11544 12578 1 virB11 P-type DNA transfer ATPase VirB11 Proteus mirabilis HI4320