Orthogroup:group_2000


Homologs in group_2000

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15045 FBDBKF_15045 Morganella morganii S1 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
EHELCC_11200 EHELCC_11200 Morganella morganii S2 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
NLDBIP_11545 NLDBIP_11545 Morganella morganii S4 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
LHKJJB_11405 LHKJJB_11405 Morganella morganii S3 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
HKOGLL_10015 HKOGLL_10015 Morganella morganii S5 pilT Type IV pilus assembly protein PilT, pilus retraction ATPase
F4V73_RS12405 F4V73_RS12405 Morganella psychrotolerans - PilT/PilU family type 4a pilus ATPase
PMI_RS01610 PMI_RS01610 Proteus mirabilis HI4320 - PilT/PilU family type 4a pilus ATPase

Distribution of group_2000 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2000 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2000

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2000.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 pilT 5
2 - 2

Product

# Product Occurence
1 Type IV pilus assembly protein PilT, pilus retraction ATPase 5
2 PilT/PilU family type 4a pilus ATPase 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2805 7 NW Cell motility (N)
Extracellular structures (W)		 Type IV pilus assembly protein PilT, pilus retraction ATPase

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00437 7 Type II/IV secretion system protein

Annotations of the 42 SwissProt hits

Annotation Number of occurrences
Archaeal flagellar ATPase motor FlaI 1
Competence protein ComGA 3
Conjugal transfer protein TrbB 1
Probable conjugal transfer protein TrbB 1
Protein VirB11 3
Protein transport protein HofB homolog 2
Putative conjugal transfer protein MT3759 1
Putative conjugal transfer protein Rv3659c 1
Putative type II secretion system protein E 1
Toxin coregulated pilus biosynthesis protein T 1
Twitching motility protein 1
Type II secretion system ATPase E 1
Type II secretion system protein E 7
Type II secretion system protein HxcR 1
Type IV pilus ATPase PilU 1
Type IV pilus assembly ATPase PilB 4
Type IV pilus assembly ATPase TfpB 1
Type IV pilus assembly protein PilF 1
Type IV pilus assembly protein TapB 1
Type IV pilus retractation ATPase PilT 1
Type IV secretion system protein PtlH 1
Type IV secretion system protein PtlH homolog 2
Type IV secretion system protein VirB11 1
Uncharacterized protein MJ0900 1
Uncharacterized protein MJ1287 1
Uncharacterized protein YggR 1
Uncharacterized protein pXO2-25/BXB0023/GBAA_pXO2_0023 1

Protein length

Min length 339
Max length 343
Mean length (sd) 340.3 (1.3)
Median length 340.0

Protein length distribution