PF00376


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00376, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00376
Description MerR family regulatory protein

Occurence in the database

PF00376 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3465 FBDBKF_15730 78377 78811 1 merR mercury resistance transcriptional regulator MerR Morganella morganii S1
1 group_3465 EHELCC_16085 77677 78111 1 merR mercury resistance transcriptional regulator MerR Morganella morganii S2
2 group_3465 NLDBIP_16280 2552 2986 -1 merR mercury resistance transcriptional regulator MerR Morganella morganii S4
3 group_3465 LHKJJB_16520 77677 78111 1 merR mercury resistance transcriptional regulator MerR Morganella morganii S3
4 group_3465 HKOGLL_16290 77677 78111 1 merR mercury resistance transcriptional regulator MerR Morganella morganii S5
5 group_3648 PMI_RS10150 2222564 2222971 1 cueR Cu(I)-responsive transcriptional regulator Proteus mirabilis HI4320
6 group_3648 PMI_RS13330 2954837 2955286 -1 soxR redox-sensitive transcriptional activator SoxR Proteus mirabilis HI4320