PF00353


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00353, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00353
Description RTX calcium-binding nonapeptide repeat (4 copies)

Occurence in the database

PF00353 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_302 FBDBKF_07975 126303 127757 1 Ca2+-binding protein, RTX toxin-related Morganella morganii S1
1 group_302 EHELCC_13805 100497 101951 1 Ca2+-binding protein, RTX toxin-related Morganella morganii S2
2 group_302 NLDBIP_14250 121372 122826 1 Ca2+-binding protein, RTX toxin-related Morganella morganii S4
3 group_302 LHKJJB_08600 36923 38377 -1 Ca2+-binding protein, RTX toxin-related Morganella morganii S3
4 group_302 HKOGLL_08150 36923 38377 -1 Ca2+-binding protein, RTX toxin-related Morganella morganii S5
5 group_302 F4V73_RS13010 215450 216904 -1 serralysin family metalloprotease Morganella psychrotolerans
6 group_302 F4V73_RS16265 63967 65796 -1 calcium-binding protein Morganella psychrotolerans
7 group_3133 PMI_RS00020 5204 13534 1 calcium-binding protein Proteus mirabilis HI4320
8 group_302 PMI_RS01355 328957 330432 -1 serralysin family metalloprotease Proteus mirabilis HI4320
9 group_3133 PMI_RS01360 331042 333105 -1 M10 family metallopeptidase Proteus mirabilis HI4320
10 group_3133 PMI_RS01365 333336 335300 -1 M10 family metallopeptidase C-terminal domain-containing protein Proteus mirabilis HI4320
11 group_3133 PMI_RS01370 335607 337571 -1 M10 family metallopeptidase C-terminal domain-containing protein Proteus mirabilis HI4320
12 group_3133 PMI_RS01375 338218 340167 -1 M10 family metallopeptidase C-terminal domain-containing protein Proteus mirabilis HI4320