PF00353
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00353, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 13 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF00353 |
Description |
RTX calcium-binding nonapeptide repeat (4 copies) |
Occurence in the database
PF00353 is associated with 13 different proteins (see tab "Protein list" and "Profile") |
The 13 proteins are classified into 2 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_302 |
FBDBKF_07975 |
126303 |
127757 |
1 |
|
Ca2+-binding protein, RTX toxin-related |
Morganella morganii S1 |
1 |
group_302 |
EHELCC_13805 |
100497 |
101951 |
1 |
|
Ca2+-binding protein, RTX toxin-related |
Morganella morganii S2 |
2 |
group_302 |
NLDBIP_14250 |
121372 |
122826 |
1 |
|
Ca2+-binding protein, RTX toxin-related |
Morganella morganii S4 |
3 |
group_302 |
LHKJJB_08600 |
36923 |
38377 |
-1 |
|
Ca2+-binding protein, RTX toxin-related |
Morganella morganii S3 |
4 |
group_302 |
HKOGLL_08150 |
36923 |
38377 |
-1 |
|
Ca2+-binding protein, RTX toxin-related |
Morganella morganii S5 |
5 |
group_302 |
F4V73_RS13010 |
215450 |
216904 |
-1 |
|
serralysin family metalloprotease |
Morganella psychrotolerans |
6 |
group_302 |
F4V73_RS16265 |
63967 |
65796 |
-1 |
|
calcium-binding protein |
Morganella psychrotolerans |
7 |
group_3133 |
PMI_RS00020 |
5204 |
13534 |
1 |
|
calcium-binding protein |
Proteus mirabilis HI4320 |
8 |
group_302 |
PMI_RS01355 |
328957 |
330432 |
-1 |
|
serralysin family metalloprotease |
Proteus mirabilis HI4320 |
9 |
group_3133 |
PMI_RS01360 |
331042 |
333105 |
-1 |
|
M10 family metallopeptidase |
Proteus mirabilis HI4320 |
10 |
group_3133 |
PMI_RS01365 |
333336 |
335300 |
-1 |
|
M10 family metallopeptidase C-terminal domain-containing protein |
Proteus mirabilis HI4320 |
11 |
group_3133 |
PMI_RS01370 |
335607 |
337571 |
-1 |
|
M10 family metallopeptidase C-terminal domain-containing protein |
Proteus mirabilis HI4320 |
12 |
group_3133 |
PMI_RS01375 |
338218 |
340167 |
-1 |
|
M10 family metallopeptidase C-terminal domain-containing protein |
Proteus mirabilis HI4320 |