PF00282


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00282, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 20 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00282
Description Pyridoxal-dependent decarboxylase conserved domain

Occurence in the database

PF00282 is associated with 20 different proteins (see tab "Protein list" and "Profile")
The 20 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_246 FBDBKF_02995 2051 3760 -1 gadA Glutamate or tyrosine decarboxylase or a related PLP-dependent protein Morganella morganii S1
1 group_2802 FBDBKF_09155 59235 60371 1 hdc histidine decarboxylase Morganella morganii S1
2 group_2078 FBDBKF_15545 36500 37882 1 gadA glutamate decarboxylase Morganella morganii S1
3 group_246 EHELCC_07540 243343 245052 1 gadA Glutamate or tyrosine decarboxylase or a related PLP-dependent protein Morganella morganii S2
4 group_2802 EHELCC_10255 85733 86869 -1 hdc histidine decarboxylase Morganella morganii S2
5 group_2078 EHELCC_15905 35800 37182 1 gadA glutamate decarboxylase Morganella morganii S2
6 group_246 NLDBIP_07865 243216 244925 1 gadA Glutamate or tyrosine decarboxylase or a related PLP-dependent protein Morganella morganii S4
7 group_2802 NLDBIP_10600 64004 65140 -1 hdc histidine decarboxylase Morganella morganii S4
8 group_2078 NLDBIP_16465 43481 44863 -1 gadA glutamate decarboxylase Morganella morganii S4
9 group_246 LHKJJB_07400 206962 208671 1 gadA Glutamate or tyrosine decarboxylase or a related PLP-dependent protein Morganella morganii S3
10 group_2802 LHKJJB_10755 126388 127524 1 hdc histidine decarboxylase Morganella morganii S3
11 group_2078 LHKJJB_16340 35800 37182 1 gadA glutamate decarboxylase Morganella morganii S3
12 group_246 HKOGLL_03530 24716 26425 -1 gadA Glutamate or tyrosine decarboxylase or a related PLP-dependent protein Morganella morganii S5
13 group_2802 HKOGLL_13815 59689 60825 1 hdc histidine decarboxylase Morganella morganii S5
14 group_2078 HKOGLL_16110 35800 37182 1 gadA glutamate decarboxylase Morganella morganii S5
15 group_2802 F4V73_RS10795 291537 292673 -1 histidine decarboxylase Morganella psychrotolerans
16 group_246 F4V73_RS11910 534985 536694 1 pyridoxal-dependent decarboxylase Morganella psychrotolerans
17 group_2078 F4V73_RS17605 158137 159519 -1 glutamate decarboxylase Morganella psychrotolerans
18 group_2078 PMI_RS06805 1485617 1487008 -1 glutamate decarboxylase Proteus mirabilis HI4320
19 group_246 PMI_RS11930 2636339 2638075 -1 pyridoxal-dependent decarboxylase Proteus mirabilis HI4320