Homologs in group_246

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02995 FBDBKF_02995 71.2 Morganella morganii S1 gadA Glutamate or tyrosine decarboxylase or a related PLP-dependent protein
EHELCC_07540 EHELCC_07540 71.2 Morganella morganii S2 gadA Glutamate or tyrosine decarboxylase or a related PLP-dependent protein
NLDBIP_07865 NLDBIP_07865 71.2 Morganella morganii S4 gadA Glutamate or tyrosine decarboxylase or a related PLP-dependent protein
LHKJJB_07400 LHKJJB_07400 71.2 Morganella morganii S3 gadA Glutamate or tyrosine decarboxylase or a related PLP-dependent protein
HKOGLL_03530 HKOGLL_03530 71.2 Morganella morganii S5 gadA Glutamate or tyrosine decarboxylase or a related PLP-dependent protein
F4V73_RS11910 F4V73_RS11910 70.1 Morganella psychrotolerans - pyridoxal-dependent decarboxylase
PMI_RS05835 PMI_RS05835 26.2 Proteus mirabilis HI4320 disA swarming inhibition tyrosine decarboxylase DisA

Distribution of the homologs in the orthogroup group_246

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_246

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q05683 3.83e-16 85 25 10 326 1 Gad2 Glutamate decarboxylase 2 Rattus norvegicus
P48319 4.05e-16 85 26 9 323 2 GAD1 Glutamate decarboxylase 1 Sus scrofa
P48320 5.04e-16 85 25 10 326 1 Gad2 Glutamate decarboxylase 2 Mus musculus
Q4PRC2 7.35e-16 84 25 9 324 2 GAD2 Glutamate decarboxylase 2 Canis lupus familiaris
P48321 7.82e-16 84 25 9 324 2 GAD2 Glutamate decarboxylase 2 Sus scrofa
A0PA85 8.78e-16 84 26 9 323 2 GAD1 Glutamate decarboxylase 1 Canis lupus familiaris
P14748 9.09e-16 84 26 9 323 2 GAD1 Glutamate decarboxylase 1 Felis catus
P48318 1.09e-15 84 26 9 323 1 Gad1 Glutamate decarboxylase 1 Mus musculus
Q99259 3.05e-15 82 26 9 323 1 GAD1 Glutamate decarboxylase 1 Homo sapiens
P18088 3.24e-15 82 26 9 323 1 Gad1 Glutamate decarboxylase 1 Rattus norvegicus
Q5R7S7 3.61e-15 82 26 9 323 2 GAD1 Glutamate decarboxylase 1 Pongo abelii
Q5IS68 3.8e-15 82 25 9 323 2 GAD1 Glutamate decarboxylase 1 Pan troglodytes
Q0VCA1 4.08e-15 82 26 9 323 2 GAD1 Glutamate decarboxylase 1 Bos taurus
Q05329 5.49e-15 81 24 9 326 1 GAD2 Glutamate decarboxylase 2 Homo sapiens
E9FCP7 3.3e-14 79 26 10 316 3 dtxS4 L-aspartate decarboxylase dtxS4 Metarhizium robertsii (strain ARSEF 23 / ATCC MYA-3075)
A0A481NV25 1.05e-13 77 26 9 253 1 tdc L-tyrosine decarboxylase Enterococcus faecium
P71362 1.13e-13 77 23 10 358 1 ddc L-2,4-diaminobutyrate decarboxylase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
I1RV23 1.01e-11 71 26 9 319 2 FG08083 Glutamate decarboxylase-like protein FG08083 Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1)
Q5E6F9 1.13e-11 71 24 13 338 1 panP Aspartate 1-decarboxylase Aliivibrio fischeri (strain ATCC 700601 / ES114)
O27188 1.22e-11 70 25 15 348 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q6M0Y7 1.56e-11 70 28 7 229 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
O28275 1.67e-11 69 25 13 307 3 mfnA Probable L-aspartate decarboxylase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q60358 1.85e-11 69 26 9 290 1 mfnA L-tyrosine/L-aspartate decarboxylase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
I0DFJ0 2.89e-11 69 22 14 400 1 None Aromatic-L-amino-acid decarboxylase Bacillus atrophaeus
A0B9M9 6.67e-11 67 23 16 375 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanothrix thermoacetophila (strain DSM 6194 / JCM 14653 / NBRC 101360 / PT)
J7GQ11 8.52e-11 68 22 16 380 1 tdc L-tyrosine decarboxylase Levilactobacillus brevis
Q9Z3R1 2.01e-10 67 22 10 323 3 rhbB L-2,4-diaminobutyrate decarboxylase Rhizobium meliloti (strain 1021)
Q43908 2.25e-10 67 22 7 317 1 ddc L-2,4-diaminobutyrate decarboxylase Acinetobacter baumannii
Q0W498 2.63e-10 66 25 13 330 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)
Q5JJ82 3.53e-10 65 22 11 306 1 mfnA L-aspartate decarboxylase Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
A4G060 5.08e-10 65 25 10 303 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain C5 / ATCC BAA-1333)
A6VIC0 6.29e-10 65 26 10 303 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain C7 / ATCC BAA-1331)
A6URB4 1.23e-09 63 25 13 337 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB)
B8GDM7 2.8e-09 62 23 15 336 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)
A5ULW4 4.24e-09 62 24 16 350 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanobrevibacter smithii (strain ATCC 35061 / DSM 861 / OCM 144 / PS)
A6UVR4 4.64e-09 62 26 6 197 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus aeolicus (strain ATCC BAA-1280 / DSM 17508 / OCM 812 / Nankai-3)
Q838D6 5.22e-09 62 24 11 247 1 tdc L-tyrosine decarboxylase Enterococcus faecalis (strain ATCC 700802 / V583)
P0DTQ4 5.22e-09 62 24 11 247 1 tyrDC L-tyrosine decarboxylase Enterococcus faecalis (strain EnGen0310 / MMH594)
A7B1V0 5.44e-09 62 23 13 320 1 RUMGNA_01526 Tryptophan decarboxylase Mediterraneibacter gnavus (strain ATCC 29149 / DSM 114966 / JCM 6515 / VPI C7-9)
Q9UZD5 8.28e-09 61 23 8 251 3 mfnA Probable L-aspartate decarboxylase Pyrococcus abyssi (strain GE5 / Orsay)
Q12VA2 2.81e-08 59 24 14 335 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M)
C5A2X8 5.12e-08 58 24 7 250 3 mfnA Probable L-aspartate decarboxylase Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
Q28D99 5.74e-08 59 25 5 181 2 gadl1 Acidic amino acid decarboxylase GADL1 (Fragment) Xenopus tropicalis
Q64611 6.63e-08 58 26 7 200 1 Csad Cysteine sulfinic acid decarboxylase Rattus norvegicus
A3CWM4 1.7e-07 57 21 14 327 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
O58679 1.75e-07 57 22 7 256 1 mfnA L-aspartate/L-glutamate decarboxylase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
A2STQ3 2.44e-07 56 22 10 290 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)
Q9DBE0 2.67e-07 57 26 7 200 1 Csad Cysteine sulfinic acid decarboxylase Mus musculus
Q8U1P6 2.78e-07 56 23 8 250 3 mfnA Probable L-aspartate decarboxylase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q9Y600 8.96e-07 55 24 7 197 1 CSAD Cysteine sulfinic acid decarboxylase Homo sapiens
Q2NHY7 1.49e-06 54 27 6 176 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3)
A0A0A2IDH4 2.31e-06 53 25 13 267 1 cnsB L-tryptophan decarboxylase cnsB Penicillium expansum
Q8TV92 4.3e-06 52 22 9 274 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Q8PXA5 5.05e-06 52 21 12 352 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q9LSH2 6.63e-06 52 26 6 205 2 GAD5 Glutamate decarboxylase 5 Arabidopsis thaliana
Q6ZQY3 7.42e-06 52 23 4 177 1 GADL1 Acidic amino acid decarboxylase GADL1 Homo sapiens
A6QM00 1.22e-05 52 23 4 177 2 GADL1 Acidic amino acid decarboxylase GADL1 Bos taurus
P54767 2.42e-05 50 25 5 204 2 None Glutamate decarboxylase Solanum lycopersicum
Q07346 4.24e-05 50 25 6 205 1 GAD Glutamate decarboxylase Petunia hybrida
Q9ZPS3 6.49e-05 49 25 6 218 1 GAD4 Glutamate decarboxylase 4 Arabidopsis thaliana
Q46DU3 7.13e-05 49 21 11 313 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina barkeri (strain Fusaro / DSM 804)
Q8TUQ9 0.000153 48 22 11 313 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
Q52RG7 0.000241 47 32 2 96 2 SPL Sphingosine-1-phosphate lyase Oryza sativa subsp. japonica
Q80WP8 0.000243 47 22 7 249 1 Gadl1 Acidic amino acid decarboxylase GADL1 Mus musculus
Q9ZPS4 0.0004 47 24 6 210 2 GAD3 Glutamate decarboxylase 3 Arabidopsis thaliana
B2HVG6 0.000418 46 23 10 302 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain ACICU)
O95470 0.000484 46 28 8 162 1 SGPL1 Sphingosine-1-phosphate lyase 1 Homo sapiens
J7SZ64 0.000584 46 23 11 331 1 CLOSPO_02083 Tryptophan decarboxylase Clostridium sporogenes (strain ATCC 15579)
Q8CHN6 0.000655 46 25 5 161 2 Sgpl1 Sphingosine-1-phosphate lyase 1 Rattus norvegicus
Q5V1B4 0.000672 45 24 18 377 3 mfnA Probable L-aspartate decarboxylase Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
Q9HSA3 0.00075 45 24 5 167 3 mfnA Probable L-aspartate decarboxylase Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
B0R349 0.00075 45 24 5 167 3 mfnA Probable L-aspartate decarboxylase Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
A3M7A4 0.000895 45 23 10 302 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain ATCC 17978 / DSM 105126 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS11930
Feature type CDS
Gene -
Product pyridoxal-dependent decarboxylase
Location 2636339 - 2638075 (strand: -1)
Length 1737 (nucleotides) / 578 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_246
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00282 Pyridoxal-dependent decarboxylase conserved domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0076 Amino acid transport and metabolism (E) E Glutamate or tyrosine decarboxylase or a related PLP-dependent protein

Protein Sequence

MKNQDLLGLSSANILNAEFEKKYRDVIAHFFSRDPQYWPIFQDKTIQSITQFRKTMTNDKDQLQRYENGQALFDRLMADGQIQQHINYPENDPNELLMLVSTLCKNWENPLAVENVIAMPSDPGVYGSILGLMGNPNMVYCEYSGVADVLEKVTIKKVAKLVGYDPEVASGVFTQGGTMCNLYGYLFGLRKSMPNSKHLGMAADQDYRIINSQGGHYSNMTNLALLGVDVNNKTIRIKVSEDNTINLEHLERELRACFTVKCKVPTIMLTTGTTDTFGVDDVKGVCELRDRLCEEFEIAVKPHIHVDAAVGWPIIFFLDYDFNSNPLAINDITLEGLRQNVAKFKHLKYADSITIDFHKWGYVPYTSSLVLVKNGNDFVALENDPENFTYFEHELEGQTHLQSTIECTRSGVGIFGAYSAMHYMGIEGYQTIIAHCLQNANYMRHQLLAMGNAKVIVPQNQGPSVGFKLYDPNLVSDPNVAFDLESTCATDKEAYDFMVHNAQWHRKLFLQRGKKGLFTNWVDSIACSKYAKNNRYVYIPGEKAVFMNPNTERSHIDNFLKIITEMSHSLSAKKVSKI

Flanking regions ( +/- flanking 50bp)

TTGCTATTCAGTTTATTTAAGCTATTGTCGGTTTTTATTTGGAGAATATAGTGAAAAATCAAGATTTGTTGGGTTTATCTTCTGCTAACATTCTAAATGCTGAATTTGAGAAGAAGTACCGTGATGTTATTGCTCACTTTTTCAGCCGTGATCCGCAGTATTGGCCGATATTTCAGGATAAAACCATTCAGTCTATTACACAGTTTAGAAAGACCATGACGAATGATAAGGATCAATTACAGCGTTATGAGAATGGGCAGGCGTTATTTGACCGTTTAATGGCTGATGGGCAGATCCAGCAACATATTAATTATCCAGAGAATGATCCTAACGAGTTACTCATGTTAGTGTCGACGTTATGCAAAAACTGGGAAAATCCATTAGCGGTTGAAAATGTCATTGCGATGCCAAGCGATCCGGGTGTTTATGGCTCAATATTAGGATTAATGGGCAATCCTAATATGGTTTATTGTGAATACTCTGGTGTTGCTGATGTTTTAGAAAAAGTCACCATTAAAAAAGTAGCTAAATTAGTAGGGTACGATCCCGAAGTTGCCTCTGGGGTTTTCACCCAGGGTGGCACCATGTGTAACTTATATGGTTATCTATTTGGTTTACGTAAATCAATGCCTAATTCTAAACATTTAGGCATGGCAGCCGATCAGGATTATCGTATTATTAACTCTCAAGGGGGTCATTATTCTAATATGACCAACTTGGCGCTATTAGGGGTTGATGTTAATAACAAGACTATCCGCATTAAGGTGTCCGAAGATAATACGATTAATTTAGAACACTTAGAGCGTGAATTAAGAGCTTGTTTTACTGTTAAGTGTAAAGTACCAACTATTATGCTGACGACAGGGACGACGGACACCTTTGGCGTTGATGATGTTAAAGGCGTTTGCGAATTAAGAGATCGTCTGTGTGAAGAATTTGAAATCGCGGTTAAACCACATATTCACGTCGATGCAGCAGTAGGTTGGCCAATTATTTTCTTCTTAGATTATGATTTTAATAGCAACCCTCTGGCTATCAACGATATTACTTTAGAAGGTTTACGCCAAAATGTGGCGAAATTTAAACATCTAAAATATGCTGATTCAATTACTATCGATTTCCATAAGTGGGGATATGTACCTTATACCTCAAGTTTAGTGTTAGTGAAAAATGGTAATGACTTTGTTGCCCTTGAAAATGATCCGGAAAACTTCACTTACTTTGAACATGAATTAGAAGGTCAAACCCATTTACAATCAACTATTGAATGTACACGTAGTGGGGTTGGTATTTTTGGGGCTTATTCTGCAATGCATTATATGGGGATTGAAGGCTATCAAACCATCATTGCCCATTGCCTACAAAACGCGAACTATATGCGCCATCAATTACTTGCTATGGGGAATGCCAAAGTCATAGTGCCTCAAAACCAAGGCCCAAGTGTTGGGTTTAAATTATATGATCCAAACTTAGTCTCTGATCCTAATGTTGCCTTTGATCTAGAATCAACCTGTGCGACAGATAAAGAAGCCTATGACTTTATGGTACATAATGCACAATGGCATAGAAAATTATTCTTACAACGGGGTAAAAAGGGATTATTTACCAACTGGGTTGATTCTATTGCTTGCTCTAAGTATGCAAAAAATAATCGCTATGTTTATATTCCGGGGGAAAAAGCTGTCTTTATGAACCCGAATACGGAACGTTCCCATATTGATAATTTCTTAAAGATAATTACTGAAATGAGCCATAGTTTAAGTGCTAAGAAAGTCAGCAAAATTTAACTCGTGAGTTGATTGAATAAAATAAACTGTACCTTGATTGAGTAAGCTTA