PF00215


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00215, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00215
Description Orotidine 5'-phosphate decarboxylase / HUMPS family

Occurence in the database

PF00215 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_934 FBDBKF_05075 20448 21182 -1 pyrF orotidine-5'-phosphate decarboxylase Morganella morganii S1
1 group_934 EHELCC_12515 160312 161046 1 pyrF orotidine-5'-phosphate decarboxylase Morganella morganii S2
2 group_934 NLDBIP_12855 160267 161001 1 pyrF orotidine-5'-phosphate decarboxylase Morganella morganii S4
3 group_934 LHKJJB_12715 160312 161046 1 pyrF orotidine-5'-phosphate decarboxylase Morganella morganii S3
4 group_934 HKOGLL_11330 160312 161046 1 pyrF orotidine-5'-phosphate decarboxylase Morganella morganii S5
5 group_934 F4V73_RS05530 1175532 1176263 -1 pyrF orotidine-5'-phosphate decarboxylase Morganella psychrotolerans
6 group_934 PMI_RS06335 1388387 1389133 -1 pyrF orotidine-5'-phosphate decarboxylase Proteus mirabilis HI4320