Orthogroup:group_1001


Homologs in group_1001

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05595 FBDBKF_05595 Morganella morganii S1 - Phage shock protein D
EHELCC_11995 EHELCC_11995 Morganella morganii S2 - Phage shock protein D
NLDBIP_12335 NLDBIP_12335 Morganella morganii S4 - Phage shock protein D
LHKJJB_12195 LHKJJB_12195 Morganella morganii S3 - Phage shock protein D
HKOGLL_10810 HKOGLL_10810 Morganella morganii S5 - Phage shock protein D
F4V73_RS03710 F4V73_RS03710 Morganella psychrotolerans - phage shock protein PspD
PMI_RS06630 PMI_RS06630 Proteus mirabilis HI4320 pspD phage shock protein PspD

Distribution of group_1001 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1001 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1001

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1001.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 6
2 pspD 1

Product

# Product Occurence
1 Phage shock protein D 5
2 phage shock protein PspD 2

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03971 7 phage shock protein D - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF09584 1 Phage shock protein PspD (Phageshock_PspD)

Annotations of the 2 SwissProt hits

Annotation Number of occurrences
Phage shock protein D 2

Protein length

Min length 78
Max length 84
Mean length (sd) 78.9 (2.3)
Median length 78.0

Protein length distribution