PF00115


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00115, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00115
Description Cytochrome C and Quinol oxidase polypeptide I

Occurence in the database

PF00115 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2104 FBDBKF_15835 15830 17821 -1 cyoB cytochrome o ubiquinol oxidase subunit I Morganella morganii S1
1 group_2104 EHELCC_18435 3269 5260 -1 cyoB cytochrome o ubiquinol oxidase subunit I Morganella morganii S2
2 group_2104 NLDBIP_17270 3269 5260 -1 cyoB cytochrome o ubiquinol oxidase subunit I Morganella morganii S4
3 group_2104 LHKJJB_17390 50928 52919 1 cyoB cytochrome o ubiquinol oxidase subunit I Morganella morganii S3
4 group_2104 HKOGLL_17005 3269 5260 -1 cyoB cytochrome o ubiquinol oxidase subunit I Morganella morganii S5
5 group_2104 F4V73_RS16475 113855 115846 1 cyoB cytochrome o ubiquinol oxidase subunit I Morganella psychrotolerans
6 group_2104 PMI_RS00515 132294 134276 -1 cyoB cytochrome o ubiquinol oxidase subunit I Proteus mirabilis HI4320